| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1162 |
|---|
| Symbol | |
|---|
| ID | 4021638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 1322432 |
|---|
| End bp | 1323565 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637961354 |
|---|
| Product | hydrogenase (NiFe) small subunit (hydA) |
|---|
| Protein accession | YP_568301 |
|---|
| Protein GI | 91975642 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1740] Ni,Fe-hydrogenase I small subunit |
|---|
| TIGRFAM ID | [TIGR00391] hydrogenase (NiFe) small subunit (hydA)
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGCAG AGACCGAAAC CTTCTACGAG GTGATCAGGC GGCAGGGCAT CACCCGGCGC
AGCTTCGTCA AGTTCTGCAG CCTCACCGCG ACCAGCCTCG GGCTCGGGCC GATCGGCGCC
AGCCAGATCG CGCAGGCGCT GGAGACCAAG CCGCGCATCC CGGTGATCTG GATGCACGGG
CTGGAATGCA CCTGCTGCTC GGAAAGCTTC ATCCGCTCGG CGCATCCGCT GGTCAAGGAT
GCCGTGCTGT CGATGATCTC GCTGGATTAT GACGACACCA TCATGGCCGC CGCCGGTCAT
CAGGCCGAGG CGATCCTCGA GGAAACCCGT ACGAAGTACA AAGGCCAATA CATCCTCGCG
GTGGAAGGCA ATCCGCCGTT GAACGAGGAC GGGATGTACT GCATCGACGG CGGCCGGCCG
TTCGTCGAGA AGCTGAAGGA AATGGCCGAC GATTCGATGG CGGTGATCGC CTGGGGCGCC
TGCGCCTCGT GGGGCTGCGT GCAGGCCGCC AAGCCGAACC CGACCCAGGC CGTTCCGATC
GACAAGGTGA TCAAGAACAA GCCGATCATC AAGGTGCCGG GCTGTCCGCC GATCGCCGAA
GTGATGACCG GCGTCGTCAC CTACGTCACC ACTTTCGGCA AGCTGCCCGA GCTCGACCGC
CAGGGTCGGC CGAAGATGTT CTACTCCCAG CGCATCCACG ACAAATGCTA TCGCCGCTCG
CATTTCGACG CCGGCCAGTT CGTCGAGGAG TGGGACGACG ATGCGGCGCG CAAGGGGTAT
TGCCTGTACA AAATGGGCTG CAAGGGCCCG ACCACCTACA ATGCGTGCTC GACGGTGCGC
TGGAACGGCG GCGTGTCGTT CCCGATCCAG TCCGGCCACG GCTGCATCGG CTGCTCGGAA
GACGGCTTCT GGGATCAGGG ACCGTTCTAC GAGCGTCTTA CCACCATCAA TCAGTTCGGC
ATCGAAGCCA ACGCCGACAA GATCGGCGCC ACGGCGGCCG GCGTGGTCGG CGCCGCCATC
GCCGCGCATG CGGCGGTGAC CACCGTTCGC AACCTGTCGC GGCGCAAGGA GGTGCCGGCC
GGCGGCGACG GCAACGGCAA GTCCAGCGGC AGTTCGAACG GCACGTCGGC TTAA
|
|---|
| Protein sequence | MGAETETFYE VIRRQGITRR SFVKFCSLTA TSLGLGPIGA SQIAQALETK PRIPVIWMHG
LECTCCSESF IRSAHPLVKD AVLSMISLDY DDTIMAAAGH QAEAILEETR TKYKGQYILA
VEGNPPLNED GMYCIDGGRP FVEKLKEMAD DSMAVIAWGA CASWGCVQAA KPNPTQAVPI
DKVIKNKPII KVPGCPPIAE VMTGVVTYVT TFGKLPELDR QGRPKMFYSQ RIHDKCYRRS
HFDAGQFVEE WDDDAARKGY CLYKMGCKGP TTYNACSTVR WNGGVSFPIQ SGHGCIGCSE
DGFWDQGPFY ERLTTINQFG IEANADKIGA TAAGVVGAAI AAHAAVTTVR NLSRRKEVPA
GGDGNGKSSG SSNGTSA
|
|---|
| |