| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1160 |
|---|
| Symbol | |
|---|
| ID | 4021636 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 1319752 |
|---|
| End bp | 1320753 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637961352 |
|---|
| Product | NADH ubiquinone oxidoreductase, 20 kDa subunit |
|---|
| Protein accession | YP_568299 |
|---|
| Protein GI | 91975640 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1740] Ni,Fe-hydrogenase I small subunit |
|---|
| TIGRFAM ID | [TIGR00391] hydrogenase (NiFe) small subunit (hydA) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCCGT TCAATGTGCT GTGGCTGCAG GGCGCGAGCT GCGGCGGCTG CACCATGGCG
GCGCTCGACA ACGGCCACTC CGGCTGGTTC GCCGACCTCG CCCGTTTCGG CATCGATCTG
ATCTGGCATC CCTCGCTGAG CGAGGCGACC GCAGACGAAG CGGTCGCGAT CTTCGAGCGC
GTGGCGGACG GCGCGCAGCG GCTCGACGCG CTGGTGCTGG AAGGCGCGGT GCTGCGCGGG
CCGAACGGCA CCGGCCGCTT CAACATGCTC GGCGGCACCC ATCGCGCGAT GCTGCATTGG
GTCCGCGCGC TCGCGCCCTG CGCGAACTAC GTCGTCGCCG CCGGGAGTTG CGCTGCATTC
GGCGGCGTGC CGATGGCCGG CAGCAATCCG ACCGACGCCA GCGGCCTGCA GTTTGCGGGC
GTGGAAGCAG GCGGCGCGCT CGGCGCGGCG TTTCGATCCC GCGCCGGCCT GCCGGTGATC
AACATCGCCG GCTGCGCGCC GCATCCGGGC TGGATTGCCG AAACACTGGC GGCGCTGGCG
CTCGGCGGTT TCGACAGCGA AGCGCTCGAC AGCTTCGGCC GGCCGCGATT CTACGCCGAT
CACCTCGCGC ATCACGGCTG CGCCCGCAAC GAGTATTACG AGTTCAAGGC CAGCGCCGAG
ACGCTGTCGC AGCAAGGCTG CCTGATGGAG CATCTCGGCT GCAAGGCGAC CCAGGCGGTC
GGCGACTGCA ACCAGCGCGG CTGGAACGGC GGCGGCTCCT GCACCAGCGG CGGCGGCGCC
TGCATCGCGT GTACGTCGCC CGGCTTCGAG GCATCGCAGA ACTTCATGGA GACCGCCAAG
CTCGGCGGCA TTCCGGTCGG CCTGCCGCTC GACATGCCGA AGGCGTGGTT CGTGGCGCTG
GCCGCGTTGT CGAAATCGGC GACGCCGAAA CGGGTGCGCG CCAATGCGAC CGCCGACCAT
GTGATCGTGC CGCCGCGCAC TGATCACGGA CGCCGCAAAT GA
|
|---|
| Protein sequence | MEPFNVLWLQ GASCGGCTMA ALDNGHSGWF ADLARFGIDL IWHPSLSEAT ADEAVAIFER
VADGAQRLDA LVLEGAVLRG PNGTGRFNML GGTHRAMLHW VRALAPCANY VVAAGSCAAF
GGVPMAGSNP TDASGLQFAG VEAGGALGAA FRSRAGLPVI NIAGCAPHPG WIAETLAALA
LGGFDSEALD SFGRPRFYAD HLAHHGCARN EYYEFKASAE TLSQQGCLME HLGCKATQAV
GDCNQRGWNG GGSCTSGGGA CIACTSPGFE ASQNFMETAK LGGIPVGLPL DMPKAWFVAL
AALSKSATPK RVRANATADH VIVPPRTDHG RRK
|
|---|
| |