Gene RPD_1138 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1138 
Symbol 
ID4021614 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1293804 
End bp1294508 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content67% 
IMG OID637961330 
ProductABC transporter related 
Protein accessionYP_568277 
Protein GI91975618 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0410] ABC-type branched-chain amino acid transport systems, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.113733 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTGAGG TCGAGGGGCT GGTCGCGGGC TATGGCGGAT CGCCGATCCT GCGCGACGTG 
TCGATCAGGC TCGCCAGCGG CGATATCGTC GGGCTGCTCG GCGCCAACAA CGCCGGCAAG
ACCACGCTGA TCAATTGCCT GTCCGGCCTG GTGTCGCCGA TGGCGGGCAA GATCCTGTTC
GAGGGACAGG ACATCACGCG CGCGACCTCG CAGCAGCGGG TCGAGCTCGG CATCATTCAG
GTGCCCGAAG GCCGGCTGGT GTTTCCGGAG ATGAGCGTGC GCGAGAACCT GCTGCTCGGT
GGGTTCTGCG ATCGCGCCAG GCCGCATCGG CCCGCGCAGA TGACCAAGGT GCTCGAGCTG
TTTCCGCGGT TGCAGGAGCG GCTGTCGCAG GCGGCGGGCA CGCTGTCGGG CGGCGAGCAG
CAGATGCTGG CGATCGGCCG CGGCCTGATG GCCGAGGCGC GCGTCCTGAT GCTGGACGAG
CCGTCGCTCG GGCTCTCGCC GCTGTTCGTC CAGTACATCT TCGAGATCAT CGACCGGCTG
CACAGTGACG GCCTGACGAT ACTGCTGGTC GAGCAGAATC TCAATCTGAC GCTGCGGCAC
GCGCAGCGTT GCTACGTGCT CGAACGCGGA CAGATCGCCG TCGAAGGCGA CGCCGATGTC
GTGCGCGACG ATCCGCGAAC GCGGCAAGCC TATCTGGGTC TGTGA
 
Protein sequence
MLEVEGLVAG YGGSPILRDV SIRLASGDIV GLLGANNAGK TTLINCLSGL VSPMAGKILF 
EGQDITRATS QQRVELGIIQ VPEGRLVFPE MSVRENLLLG GFCDRARPHR PAQMTKVLEL
FPRLQERLSQ AAGTLSGGEQ QMLAIGRGLM AEARVLMLDE PSLGLSPLFV QYIFEIIDRL
HSDGLTILLV EQNLNLTLRH AQRCYVLERG QIAVEGDADV VRDDPRTRQA YLGL