| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1133 |
|---|
| Symbol | |
|---|
| ID | 4021609 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 1288095 |
|---|
| End bp | 1289651 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637961325 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_568272 |
|---|
| Protein GI | 91975613 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.508244 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.50206 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTGA CGTCGGGCCT TCGCAAGGCG ACCGCGTTCC GCGCGGACCA GACGGCGATC
GTCGCCGGCG AACGCAGCTT CACGCATGGC GAATTGCTCG ATCGGGTGTC GCGGCTGGCG
TCCGCGTTCC GCGCGTTCGG CGTCCGGACC GGCGATCGCG TCGCGATCCT CGCCGCCAAC
GGCCATCCTT ATGTCGAGTG CTACTTCGCC GTGCTCTGGG CCGGCGGCGT CGTCGTGCCG
GTCAATTCCC GTTTCGCGCT CGCCGAAATG ATCGAGCAGG TGAACGACGC CGAGCCGTCG
ATCCTGGTGT GCGATCAATC GTTTGCGGAT ATCGCGGTGC AGATCGCCGA GGCCTGTTCG
TGCCTCACCG CGATCGTGGC GACTGCGGCC GCGGCGGGCC TGCCCGGCGT GTACGACTAC
GAGTCCGCAG TGGCGAATGC CGAGCCTTGC GACGATGCCG GGCGCGGCGG CGAGGATCTC
GCTTGTCTGT TCTACACCGG CGGCACCACC GGCCGGTCGA AGGGCGTGAT GCTCAGCCAT
CGCAATCTCT GGGTGAATGC GGTCGTCACC GCGATGTCGT TCGGCTTCGA CGAGTCCACG
GTGGCGCTGC ACGCCGGCCC GCTGTTTCAT CTCGGCGCCG GTGCGCGGGT CTATACGACG
TCGATCATGG GCGGGCGGCA CGTCGTGATC CCGCGCTTTG CGCCGACCGA GGTGCTGGAG
GCGATCTCGC GGCACAAGGT GACGGTTGCG ACCTTCGTGC CGACCATGCT CGGCATGATC
CTTCAACTAC CGGATCTGGA TTCCTACGAT CTCTCCAGTC TGAAGCTGAT CACCTACGGC
GCTTCGCCGA TGCCGGAGGC CGTGCTGCAG GAATGTCTGC GGCGTTTTCC GTCGATCAAA
TTCGGCCAAT CCTACGGCAT GACCGAATTG TCGCCGGTGG CGACGATTCT CGCGCCCGAC
GATCATCTGC CCTCGGCGCC GCGGCGACGC CTGCGCTCGG CGGGCCGGCC GATCGTCTCG
GCGGAGGTGA AAGTGGTCGA CGCCGAGGAT CGCGAGCTGA AGCGCGGTGA GGTCGGCGAG
ATTGTGGTGC GCGGCCCGAT GGTGATGATG GGCTATTGGC GCAAGCCCGA GCTGACCGCG
GAGGCGCTGC GCGGCGGCTG GATGCACACC GGCGATTCCG GCTCGTTCGA CGCCGACGGC
TATCTCTACA TTTCCGATCG CATCAAGGAC ATGATCATCA GCGGCGGCGA GAACGTGTAT
TCGATCGAGG TCGAGAACGC GGTGCTGACG CATCCCGAGG TGATGCAATG CGCGGTGATC
GGAATCCCGC ATCCGAAATG GGGCGAGGCG GTGCACGCCG TCGTGGTGCG GCGACCCGGT
TCGTCGCTGT CGGCCGAGGA GCTGATAGCC TTCTGCCGCT CGGCGATCGC CGACTACAAA
TCGCCGCGCA GCGTCGAATT CCGCGACGAT CCGCTGCCGC TGTCGAGCGT CAACAAGGTC
AACAAGGCGG CGCTGCGTCA GCCCTATTGG AAGGACAGGC CGCGTCAGCC GAGCTGA
|
|---|
| Protein sequence | MQLTSGLRKA TAFRADQTAI VAGERSFTHG ELLDRVSRLA SAFRAFGVRT GDRVAILAAN
GHPYVECYFA VLWAGGVVVP VNSRFALAEM IEQVNDAEPS ILVCDQSFAD IAVQIAEACS
CLTAIVATAA AAGLPGVYDY ESAVANAEPC DDAGRGGEDL ACLFYTGGTT GRSKGVMLSH
RNLWVNAVVT AMSFGFDEST VALHAGPLFH LGAGARVYTT SIMGGRHVVI PRFAPTEVLE
AISRHKVTVA TFVPTMLGMI LQLPDLDSYD LSSLKLITYG ASPMPEAVLQ ECLRRFPSIK
FGQSYGMTEL SPVATILAPD DHLPSAPRRR LRSAGRPIVS AEVKVVDAED RELKRGEVGE
IVVRGPMVMM GYWRKPELTA EALRGGWMHT GDSGSFDADG YLYISDRIKD MIISGGENVY
SIEVENAVLT HPEVMQCAVI GIPHPKWGEA VHAVVVRRPG SSLSAEELIA FCRSAIADYK
SPRSVEFRDD PLPLSSVNKV NKAALRQPYW KDRPRQPS
|
|---|
| |