| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1131 |
|---|
| Symbol | |
|---|
| ID | 4021607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 1286377 |
|---|
| End bp | 1287117 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637961323 |
|---|
| Product | nuclease (SNase-like) |
|---|
| Protein accession | YP_568270 |
|---|
| Protein GI | 91975611 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1525] Micrococcal nuclease (thermonuclease) homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.844533 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.680053 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGCGG TCATTTTCGT GTTGGCGTTT CTGGTCGGCG CGCCGGCCTT TGCCGTGGCT
GCCGATGCGA TCGTCCGGGA CGCCGCGACG CTGCAGCTCG GCGGCGTGAC TTATCGGCTG
GAGGGCATCG ACGCCCCCGA GCTCGACCAG CGATGTATCA GCGAGTTCGC CGATCCCTCG
ACCTGCGGGA TCGAGGCCCG CGACGCGGCG GTGAAGCTGA TCGGCGGCCG CGCCGTCGCC
TGCCGCGATC TCGGCCCGGA CCCGGTGTTC AAGGGGCGCC GGATCGGCGC CTGCACAATC
GCGGGCGACA ATCTGAGCCA GCAACTCGTC AAGGCCGGAC TGGCGCTGAG CGCGGACCCC
AAGGGCCGCT TCGCCGCCGA CGAAGCCAAG GCCAAGGCGG ATCGCGTGGC GTTGTGGAAG
GGCTGCTTCG TCGCGCCGCA AAGCTTCCGG CAATGGAACA AGACCGCGCC GCTGCTCGGC
GCCGCCTGCC GCGACGACCG GCAGGCCGAG ATGCTCGACG TGATGTTTCC GGACATGCCG
CCGATGCCGG ATGGCTGCAA CATCAAAGGC AAGCTCGCCA AGCGCGCCCG CATCACCGGC
AATGTCGGCG TCTATCAACT GCAGGGATGC CCGAGCTACG CCAGCCTCGC CAAGCCGAAC
CGCTGGTTCT GCTCGGAAGA CGACGCCAGG GCCGCCGGGT TCCGCAAGGC TTACAATTGC
AGGATCAGCG CCAAGCGCTG A
|
|---|
| Protein sequence | MVAVIFVLAF LVGAPAFAVA ADAIVRDAAT LQLGGVTYRL EGIDAPELDQ RCISEFADPS
TCGIEARDAA VKLIGGRAVA CRDLGPDPVF KGRRIGACTI AGDNLSQQLV KAGLALSADP
KGRFAADEAK AKADRVALWK GCFVAPQSFR QWNKTAPLLG AACRDDRQAE MLDVMFPDMP
PMPDGCNIKG KLAKRARITG NVGVYQLQGC PSYASLAKPN RWFCSEDDAR AAGFRKAYNC
RISAKR
|
|---|
| |