Gene RPD_1129 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1129 
Symbol 
ID4021605 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1284874 
End bp1285833 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content68% 
IMG OID637961321 
Productphenylacetic acid degradation-related protein 
Protein accessionYP_568268 
Protein GI91975609 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism 
TIGRFAM ID[TIGR00369] uncharacterized domain 1 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.705789 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.314496 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCCGGGA TCGCTTGCTA CAAGATGGGC ATCATGCCCG ACACCTCCAG CGAACCGCGT 
GCGATCTCCT TCGATGAGAA GGCCCGGATG CTCCAGCTCC GCCGCTCGAT CCACGGCGCC
ATCATCGGCC TCAAGCTCGA CCGGTTCGCG CCGGCGCAGG CCTGGAGCAG CCTGCCCTAT
CATCCGGTGT TCGTCGGCGA CACCCGCACC GGCGTCATTC ACGGCGGCGT CGTCACCGCG
ATGCTCGACG AGAGCTGCGG CATGGCGGTG CAACTCGCGC TGCCCGACAC GCCGGCGATC
GCGACGCTCG ATCTGCGCAT CGACTATCTG CGGCCGGCGA CGCCCGGACA GGCGATCCGC
GCGCACGCGC ATTGCTATCA CCTCACCCGG TCGATCGCCT TCGTCCGCGC CACCGCCTAT
CAGGACTCCG AGGCCGATCC GATCGCCAGC GCCACCGCGA TGTTCATGAT CGGCGCCAAC
CACACCGATA TGCTGCGGCA AACGCCGAAG GTGCATTTCG ACACCCCGCC GCCGCTGGTG
GCCCCGGAGG ACCCCGACGG GCCGCTCGGG ATCAGTCCCT ATCCGCGCTT TCTCGGCATC
CGGGTCAACG CCGACGCGCA GCCGGTGATG CCTTACGATC CGAAGCTGGT CGGCAATCCG
ATCCTGCCGG CGCTGCATGG CGGGGTGATC GGCGCGTTTC TGGAAACTGC GGCGATCGTC
AGCGTTCATC GCGAGATCGG CCTCGCCACC GCGCCGAAGC CGATCGGCCT GACCGTGAAC
TATCTGCGCT CCGGCCGGCC GCTCGACACC TACGCCAAAG TCTCGATCGT CAAGCAGGGC
CGCCGCGTCG TCGCGTTCGA GGCGCAGGCC TATCAGGCCG ATCCCGCCAA GCCGATCGCG
TCCTGCTACG GCCATTTCAA GCTGCGCGCG GCACCCTCGC GCGACGGCAC CAGAGCATGA
 
Protein sequence
MAGIACYKMG IMPDTSSEPR AISFDEKARM LQLRRSIHGA IIGLKLDRFA PAQAWSSLPY 
HPVFVGDTRT GVIHGGVVTA MLDESCGMAV QLALPDTPAI ATLDLRIDYL RPATPGQAIR
AHAHCYHLTR SIAFVRATAY QDSEADPIAS ATAMFMIGAN HTDMLRQTPK VHFDTPPPLV
APEDPDGPLG ISPYPRFLGI RVNADAQPVM PYDPKLVGNP ILPALHGGVI GAFLETAAIV
SVHREIGLAT APKPIGLTVN YLRSGRPLDT YAKVSIVKQG RRVVAFEAQA YQADPAKPIA
SCYGHFKLRA APSRDGTRA