Gene RPD_1121 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1121 
Symbol 
ID4021597 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1275681 
End bp1277300 
Gene Length1620 bp 
Protein Length539 aa 
Translation table11 
GC content69% 
IMG OID637961313 
ProductABC transporter related 
Protein accessionYP_568260 
Protein GI91975601 
COG category[R] General function prediction only 
COG ID[COG3845] ABC-type uncharacterized transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0474016 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGAAGAGC GTAGCGCCCA ATTGAATTAC ACGTCTTCGT CTCAAGATCG CCCATCCGAC 
GCCTCTGCGG CAGCGCCGCC GGAGCGTCCG CCGCTGTTTC AGGGCCTCGG CCTGACCAAG
CGCTATGGCG ATTTCACCGC CAATTCGGCG ATCGATATCG CGATCGCGCC GGGCCAGATC
CATGCGCTGC TCGGCGAGAA CGGCGCCGGC AAGTCGACGC TGGTCAAGAC CATCTGCGGG
CTGATCCAGC CGGACGACGG CGCGATGCGC TGGCGCGGCG CGCCATTCGC GCCCGCCGGC
CCGGCCGATG CGCAAGCCTG TGGCATCGGC CTCGTCTCGC AGCATTTCGC GCTGTTCGAC
AATCTCACCG TCGCCGAGAA CGTCGCGCTC GGACAGCGCG GCGGTGAATC ACTCGACATC
CTATCGAGAC GGCTGGCGCA GATCGCCGAA CGCTACGGGC TGCCGCTCGA TCCGAAGCGC
GAGGTGTGGC GGCTGTCGGT CGGCGAGCGG CAGCGGATCG AGATCGTCCG CGCGCTGATG
CAGGATCCGC AATTCCTGAT CCTCGACGAG CCGACCGCGG TGCTGACGCC GGCCGAAGCC
GACCGGCTGT TCGATGTACT GGAGCAATTG CGAGCCGATG GCCGCGCGCT GCTCTACATC
TCCCACAAGC TCGAAGAGGT GAAGCGGCTG TGCGACACCG CCACGATCCT GCGCGCCGGT
CGCGTCGTCG CCGCCTGCAA CCCGCGCGCC GAGACCGCGG CGTCGCTGGC GCGGATGATG
GTCGGCGTCG ACGTGATCCC GCCCAAGCCG CAGCCCGGCC ACAGCATCGG CGCGCCGCGC
CTCGTCGTGA ACGGGCTCAG CCTTGCGCCC GACGATCCGC ACGGCGTGAC GCTGAAGCAG
ATCGATCTGC AGCTGCGCGG CGGTGAGATC GTCGGCATCG CGGGCGTCGC CGGCAACGGC
CAGGACGAAT TGTTCGCGGC CCTGTCCGGC GAAGCGCCAC TCGACGAGGC GCGAACGATC
CTGATCGACG GACAGGCGGC CGGCGATCTG TCGATCACGG CGCGACGCCG GTTCGGCGCC
GCTTTCATCC CGGAGCAACG GCTCGGCCAC GCCACCGTGC CGACGATGCG GCTGTCCGAA
AACGCGCTGC TCACGAGCCA CGCCGACCCC GGCGTGGTGC GGCGCGGTTT CGTCGATCGG
GCCGCCCTGC TCGGTCTCGT CGATCGGGTC ACCGCGGCGT TCGGGGTGCG CAAGGCTCAG
CGCGATCCGG AGGCCGAGCG ATTGTCCGGC GGCAATCTGC AGAAATTCAT CGTCGGCCGC
GAAATTCTGC GCCAGCCGAA GCTGCTGGTG GTCAACCAGC CGAGCTGGGG GCTCGACGCC
GGCGCGGCCG CGGCGATCCG GCAGGCGCTG ATCGATCTCG CCGCAGGCGG CGCGGCGGTG
CTGGTGATCA GCCAGGACCT CGACGAACTG CTCGAAATCG CCGACAGCAT CGCGGTGATG
TATCACGGCC GGCTGTCGCC GCCGCTGGCC GCGGCCGAGA CCGGTCGCGA GCAGCTCGGG
CTTCTGATGG GCGGCAGCGG CTGGCCGCAA CAGAGTGTGC ACGATGCAAT TCCTGCTTGA
 
Protein sequence
MEERSAQLNY TSSSQDRPSD ASAAAPPERP PLFQGLGLTK RYGDFTANSA IDIAIAPGQI 
HALLGENGAG KSTLVKTICG LIQPDDGAMR WRGAPFAPAG PADAQACGIG LVSQHFALFD
NLTVAENVAL GQRGGESLDI LSRRLAQIAE RYGLPLDPKR EVWRLSVGER QRIEIVRALM
QDPQFLILDE PTAVLTPAEA DRLFDVLEQL RADGRALLYI SHKLEEVKRL CDTATILRAG
RVVAACNPRA ETAASLARMM VGVDVIPPKP QPGHSIGAPR LVVNGLSLAP DDPHGVTLKQ
IDLQLRGGEI VGIAGVAGNG QDELFAALSG EAPLDEARTI LIDGQAAGDL SITARRRFGA
AFIPEQRLGH ATVPTMRLSE NALLTSHADP GVVRRGFVDR AALLGLVDRV TAAFGVRKAQ
RDPEAERLSG GNLQKFIVGR EILRQPKLLV VNQPSWGLDA GAAAAIRQAL IDLAAGGAAV
LVISQDLDEL LEIADSIAVM YHGRLSPPLA AAETGREQLG LLMGGSGWPQ QSVHDAIPA