Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_1111 |
Symbol | |
ID | 4021587 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 1262993 |
End bp | 1265059 |
Gene Length | 2067 bp |
Protein Length | 688 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637961303 |
Product | lipopolysaccharide biosynthesis |
Protein accession | YP_568250 |
Protein GI | 91975591 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCGCCCC AGCCGTCTTC GCCCGATGCG CCGACCGACC GGACCTCCGA TGGGCTCGAT TTCAGGAATG TCCTCGGCAT TCTGGCGCGG CGAAAGAACT GGGTGATCGG CGTCCCGCTG GCGCTATGCG CTATGGTGGC CGCCTATCTG TTGATCGCCC AGCCGGCCTA TACCGGGATG GCGCAGGTCT TCGTCGATCC GCGCGATCAG TACACGCCGA AGGACGATCC GCTGCAGAAT TCGGTCCCCG GTGACGGTCT GTTGCTGGTC GAAAGCCAGC TCAAGATCAT CACCTCGAAC GAGGTGCTGA ATCGCGTCAT CGAACAGATG GATCTGCAGA ACGATCCGGA ATTCAACGGC CAGCGCTTCG GCATCGGCAG ATTCGTGAAA TCGCTGATCG GGCTCGGCAA GACCGAAGAC CGCGCGCTGA CCACGCTGCG CAATCTGCGT CTCAAGGTCG CAACCAGGCG GATCGATCGC TCCTTCGTGA TCGACATTCT GGCTTCCGCC GACACCGCGC CGCGCGCCGC CGCGCTCGCC AATGCGGTGG CGACCTCGTA TCTCGAAGAA CAGGCCGGCG CCAATTCGGC GTTCCAGCGC CGAACCTCGG AGGCGATCTC GGCGCAGCTC GGCAAGCTGC GGCAGGAGGT GAAGCGCGGT GAGGAGGCGG TGGCGGCGTT CAAGGCGGCC AACAATCTGG TCGGGGCGCG CAGCCGCTTG GTGAGCGAGC AGCAGCTCGA CGAAGCCAAC ACCCAATTGA CCAATGCCCG GACCCGGCTG GCCGATGCGC AGGCGCGCGT GCGGCTGATC GAAACCGTCG AGCAGGGCAA TGCCGGTCTC GATTCGCTGC CCGAGGCGAT GCAGTCGGCC GCGATCGTGC AGCTGCGCGG ACGCGCGGTC GATGCGTCGC GCGAGGAGGC GCAGCTCGCG CAGATCAACG GGCCCAACCA TCCGGCGCTG CAGGCGGCGC GGGCGCAGGT GCGTGACGTT CAGGCGGCGA TCCAGCGCGA GCTGAAGACG ATCGCCCGGT CGGTCCGCAA CACCGAGGCC AGCGAGCGAA CCAATGTGCA GAACCTGCAG GCCAATTTCG ACGCGCTGAA AGCCCAATCG CAGGCCAATG ACAAATTGAT GGTCCCGCTG CGCGAACTCG AGCGCAAGGC GGAGTCGAGC CGCATCGTTT ACGAAAGCTT CCTCGCCAAA GCGAAGACGG CCGAAGAACG GCAGGGCATC GACACCACCA ACATTCGGCT GATCTCCCGC GCCACGGCGC CGGAAAACAA GAGCTGGCCG CCGACGCTGA TCATGCTCGC GGCCGCGATC TTCGCGGGCC TGACGATCGG AATAGCGCTC GCGCTGGCGC GTGATTACTT CGAGCGGCCT GTCAGGGACC CCGAGCCGGA TGCCGTCGCC GTGTCCGATG CGCCGTCTCT GGCCCCGGCC GATCCGGCGC CGGTGTTTCG GCCGGCGGTG AAGGCGCAGA GCCACGCCGG CCGGTTGAGT GCGCTGAGCG AGGAGTTGCT CGCGGCGCCG AAGGGCCACA CCGTCGTGCT GGTTCAGGTC CAGCGCGGCG CGTGGCTGGA CGACGTCGCA TTGCAGCTCG CCCGCACCGT GATCGCCAAC CAGATGGACG TCATGCTGGT CGACGCCGAC CTCGCGCGGC ATCAAACGAC CTCGCGGCTG GGCTATGACG ACGCGCCCGG CCTGCGCGAC GTCATGGCCG GCGATGCCGC GATCGGCGAC GTCGTCCGAT TGCACAAGCC GACCGCGATG CGCGTCGTTC CGGTGGGGCT CGCCGCCGTC GGCAGTCGCG ATCCGCGGGC GCGGCAGGCG TTGTCCCTGG CCTTTCAGCA GCTTCGGGTA TTCGATCGCG TGATCGTCGA TGGCGGCGAG ATGGGATCGA CGGCCTCCGA ATTCGGCATG TACTACATGG CCGACGAAGT GGTGTTCCTC GCGCAGGCGC CGGGCGGCAA AAGCGACGAC GCGGCGATCC TGGTCGATCT GCTGCAGCAC CGCCAGATCA AGGCGCGGGT CGTGTTCGTG GAGCCGGACG TTTCGGTGGC GGCATGA
|
Protein sequence | MSPQPSSPDA PTDRTSDGLD FRNVLGILAR RKNWVIGVPL ALCAMVAAYL LIAQPAYTGM AQVFVDPRDQ YTPKDDPLQN SVPGDGLLLV ESQLKIITSN EVLNRVIEQM DLQNDPEFNG QRFGIGRFVK SLIGLGKTED RALTTLRNLR LKVATRRIDR SFVIDILASA DTAPRAAALA NAVATSYLEE QAGANSAFQR RTSEAISAQL GKLRQEVKRG EEAVAAFKAA NNLVGARSRL VSEQQLDEAN TQLTNARTRL ADAQARVRLI ETVEQGNAGL DSLPEAMQSA AIVQLRGRAV DASREEAQLA QINGPNHPAL QAARAQVRDV QAAIQRELKT IARSVRNTEA SERTNVQNLQ ANFDALKAQS QANDKLMVPL RELERKAESS RIVYESFLAK AKTAEERQGI DTTNIRLISR ATAPENKSWP PTLIMLAAAI FAGLTIGIAL ALARDYFERP VRDPEPDAVA VSDAPSLAPA DPAPVFRPAV KAQSHAGRLS ALSEELLAAP KGHTVVLVQV QRGAWLDDVA LQLARTVIAN QMDVMLVDAD LARHQTTSRL GYDDAPGLRD VMAGDAAIGD VVRLHKPTAM RVVPVGLAAV GSRDPRARQA LSLAFQQLRV FDRVIVDGGE MGSTASEFGM YYMADEVVFL AQAPGGKSDD AAILVDLLQH RQIKARVVFV EPDVSVAA
|
| |