Gene RPD_1106 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1106 
Symbol 
ID4021582 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1257236 
End bp1257757 
Gene Length522 bp 
Protein Length173 aa 
Translation table11 
GC content67% 
IMG OID637961298 
Productflavin reductase-like, FMN-binding 
Protein accessionYP_568245 
Protein GI91975586 
COG category[R] General function prediction only 
COG ID[COG1853] Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.321657 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGTGC GGCCGGCAAC CATTCCCGCG AGCGCCACCG GCTCAGCGAC CTTCAAGGCC 
GCGATGCGGC ATCTCGCCGG CGGCGTCAGC ATCGTCAGCA GCGGGCAGGG CGACGACCGC
AACGGTCTCA CGGTGACCTC GGTGAGTTCA TTGTCCGCCG AGCCGCCATC GCTGATCGTC
TGCATCAATC GCGATTGCTC GATCCTCCCG GTGCTCCGGG ATCAGGGAAA TTTCGGCGTC
AACATCCTCG GCAGCGGTCA TCGCGAGCTT GCGGATCGCT TCGCCGGCCG CCACGGAATC
CGCGGCGCGC AGCGTTACGA CAGCGGCGAC TGGATCGAGT TGGTCACCGG GGCGCCGCTA
TTGGCCGACG CGCTGGCGGC GATCGACTGC ACGGTCGACA GCATCATGGA CTGGAACAGC
CACGCGCTGG TGATCGGCCG GGTCGAAGCG GTCCATTTCC ACGACGGGCC GCAGGCGCTG
GTGTATTGGC GGGGCGGCTA TCTCGACGTC GGCGCCGAAT AG
 
Protein sequence
MNVRPATIPA SATGSATFKA AMRHLAGGVS IVSSGQGDDR NGLTVTSVSS LSAEPPSLIV 
CINRDCSILP VLRDQGNFGV NILGSGHREL ADRFAGRHGI RGAQRYDSGD WIELVTGAPL
LADALAAIDC TVDSIMDWNS HALVIGRVEA VHFHDGPQAL VYWRGGYLDV GAE