| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1039 |
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| Symbol | |
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| ID | 4021515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 1191683 |
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| End bp | 1192561 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637961231 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_568178 |
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| Protein GI | 91975519 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00870669 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACGA GCGCGGCGGG GAAAATGACT GCCCTGGTCA CAGGCGCGAA TTCGGGGCTG
GGCAAAGCCA TCGCAGCAGC GCTGGCGGCC GATATGCGCG TCGGGCTGGT GGTCCGCGAT
CGCGCCCGCG GCGAGCAGGC GCTGGAGGAC ATCCGCGCCG CCACGGGCAA CGACGATCTG
CATCTTTTCG TCGCCGATCT GGCCGATCAG TCAGCGATCC GCGCCCTCGC GCAGTCGGTG
CATGAGCGCT TCGAGCAACT GCATCTATTG GTGAACAATG CCGGCACCGC CTTCGCCGAG
CGACGGCTCA GCCCACAGGG TATCGAGTGT GCGCTGGCGG TGAATCACCT CGGCCCGTTT
CTGCTCACCA ACCTGCTGCT GGATTTGCTC AAAGCGAGCG CGCCGGCGCG GATCGTCAAT
GTCGGCACCC GTATCAACAC GGCGCTGGAT TTCGATGATC TGAATTGGGA GCGGCGACCC
TACGGCCTGA TGCAGGCCTA TGGCCAGTCC AAGCTCGGCA ATCTGCATTT CACCTTCGAA
CTGGCGCGCC GGCTGCAGGG CAGCGGCGTA ACGGTCAATT GCGTCTTTCC GGGCGTTTTC
AGATCGAACC TGGGCGGCAC CGATGGCGCG CAGGGCCTAC TGTTGAAGCT GTTTGCCCGG
CTGCTGGGCT GGGCGATCCC CTCCCCCGAA CGGGCGGCGC GGCGGGTGCT GTATGTCGCC
AAAGCACCGG AGCTGGCGAA CGTCAGTGGT CAGTATTTCG GCTATCGCAA GACCATCCCG
GCACCCGCCC AGGCGCTCGA CGCGCAAGCG AACCGCCGCC TGTGGCAAAT CAGCGAAGCG
CTGACGACTC CCGCCCAGCC CGGCCACGCC GACGCCTGA
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| Protein sequence | MSTSAAGKMT ALVTGANSGL GKAIAAALAA DMRVGLVVRD RARGEQALED IRAATGNDDL
HLFVADLADQ SAIRALAQSV HERFEQLHLL VNNAGTAFAE RRLSPQGIEC ALAVNHLGPF
LLTNLLLDLL KASAPARIVN VGTRINTALD FDDLNWERRP YGLMQAYGQS KLGNLHFTFE
LARRLQGSGV TVNCVFPGVF RSNLGGTDGA QGLLLKLFAR LLGWAIPSPE RAARRVLYVA
KAPELANVSG QYFGYRKTIP APAQALDAQA NRRLWQISEA LTTPAQPGHA DA
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