| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1029 |
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| Symbol | |
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| ID | 4021505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 1172349 |
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| End bp | 1175543 |
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| Gene Length | 3195 bp |
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| Protein Length | 1064 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637961221 |
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| Product | CRISPR-associated Cas5e family protein |
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| Protein accession | YP_568168 |
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| Protein GI | 91975509 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3513] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01865] CRISPR-associated protein, Csn1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.169021 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAGT GTGTTACTCG GCGAATTCTT GGAATTGACC TCGGTATTGC ATCTTGCGGA
TGGGGGGTCA TCGAGGTTGG CGAGGCTAGC GGAAGTATCA TTGCCTCCGG CGTTCGGTGC
TTCGACGCGC CATTGATCGA CAAGACCGGT GAGCCGAAGA GCGCGACGCG GCGCACAGCG
CGGGGGCAGC GGCGAATTAT TCGCCGCCGT CGGCAGCGCA TGAACGCCGT CCGGCGCCTG
CTTGCTGAAT TTGGTGTGCT TACGGGTCGG TCACCGGATG CCCTACATCA GGCACTGCTC
AGACTCTCGC AAAGCGTTGC GGGATCACAA GTCACGCCGT GGACGCTTCG CGCGGCCGCG
CATGAGCGTA AGTTGACCAA TGACGAATTG GCAGTTGTTC TCGGTCATAT CGCCCGGCAC
CGCGGCTTCC GCTCGAACTC CAAGAACGAT GGCGGCGCGA ATGCCGCGGA CGAAACGTCC
AAGATGAAAA AAGCGATGGA GACCACGCGC GAAGGTCTCG CGAGATATCA TTCGTTCGGC
GCCATGATCG CCAGCGATCC GAAATTCGCC GATCGAAAGC GCAACCGTGA CAAGGACTAT
TCACACACAG CGAAGCGCTC CGATCTGGAA GACGAGGTTC GCACGATTTT TCGGTCGCAA
ACCCGGTTCG GCAGCTTGGT TGCCAGTGAA AAACTGTCGC AGGCGTTTGC GGATGCGGCG
TTCTTCCAGC GTCCGCTGCA GGACAGCGAA GACATGGTGG GTTCTTGCCC GTTCGAGCCG
GGACAGAAGC GGACCGCACG CCGCGCACCT TCATTTGAGT TGTTCCGTTT CCTCTCCCGG
CTGGCCAATC TCAAACTGAC CGTCGGCAGA GCGCCGGAAC GGCGGCTGAC CCCGGATGAA
ATTGCACTGG CCGCCAAAGG CTTCGGCGAG ACCAAGAAGA GCATCACGTT CAAATCGTTG
CGCGAGGCGC TCGATCTCGA TCCGAACGCG CGCTTTTCCG GCGTCGCGAA GGAGAAGGAG
AGTACGCTCG ATGTCGCCGC GCGCACCGGG GGGGCCGCCT ACGGAACCAA GACGCTAAAG
GATGCGCTGG GCGATGCGCC GTGGCGATCG TTATCGCGAA TGCCTGAAAA ACTCGATCGC
ATCGCAGAGA TACTGTCATT CCGCGAGGAC ATGAAAGCGA TCCGGAACGG ACTTGAAGAA
GTCGGGCTCG ATGGCCTTGT TGTCGATGCC CTCATGCAGG CCACGGCCAA CGGTGATTTC
AAGGACTTTA CGCGGGCCGC GCACATCTCG GCGCTGGCGG CGCGGAATAT CATTCCCGGA
TTGCGCGAAG GGCTGGTCTA TTCGGACGCC TGCACGCGCG TTGGTTACGA TCATGCCGCT
CGGCCCGCGG TCCCCCTCAG TCAGATCGGC AGTCCGGTGA CCCGAAAGGC GCTGAGCGAG
GCGCTCAAGC AAGTGAGGGC CGTGGCGCGT GAATATGGTC CGATCGATTA CTTTCATATC
GAACTTGCAC GCTCCATCGG CAAGAGTGCC GAGGAGCGCA AGAAGCTGAC CGACGGCATC
GAAGCGAGAA ATGTCGAGAA GGAGAAGCGG CGAAAGGAGG CCGCGGAACA CCTTGGCCGC
GCGCCGAGCG ACGATGAACT GTTGCGATAC GAACTCGCCA AGGAACAGAA CTTCAAATGC
ATCTATTCCG GTGATCCGAT CGACCCCGCA GGCATCTCGG CGAACGACAC ACGCTATCAG
GTCGATCACA TTCTGCCATG GAGTCGCTTC GGCGACGATT CCTATGTGAA CAAGACGCTC
TGCACCGCCA GATCGAATCA GAATAAGCGT GGCCGAACGC CGTTCGAATG GTTCGATGCC
GACAAGACCG AAGCTGAATG GATGGAGTAT TCAGCCCGCG TCGAGGACCT CAAGGAGGTC
AAGGGACGCA AGAAACGGAA CTACAGCATC AAGGATGCGG CGAGCGTCGA GGATAAGTTC
AAGGCGCGCA ATCTCACAGA CACGCAATGG GCGACCCGGT TGCTCGCCGA CGAACTCAAG
CGGATGTTTC CGCCGCGAGA GTGCGAGCGG GTGGTGACTG TCCGAGCGGA CGGCGGCAAC
GATGGACTAT CGATCGTGGA GGAGCGCCGG GTGTTCACGC GACCCGGCGC TATCACATCC
AAGCTCAGGC GGGCCTGGGG ACTCGAGGGA CTCAAGAAGC AGGATGGAAA GCGGGTCGAG
GATGACCGGC ATCACGCCGT GGACGCGCTG GTGCTGGCCG CCACGACCGA GAGCCTGTTG
AATCGCCTGA CCGTCGAGGT GCAACAGCGC GAACGCGAGG GACGCCAGGA CGACATCTTC
CATTGCAGCC AGCCGTGGCC GGGTTTTCGG GTTGACGTGC AACGCACGGT CTATGGCTCC
GAGACCATGC CGGGTATTTT CGTGTCGCGC GCCGAACGCC GCCGCGCCCG CGGCAAGGCA
CATGACGCGA CCGTGAAGCA GATCCGTGAC ATCGATGGCG AGAGAATTGT CTTTGAACGC
AAGCCGATTG AAAAACTGAC GGACAAGGAT CTGGAGAGGA TTCCGGTTCC GGAACCGTAC
GGGAAGGCGG CCGATCCGAA AAAATTGCGC GATGAACTGG TGGAGAACCT CCGCGCGTGG
ATCGCCGCCG GAAAACCCAA GGACAAGCCG CCGCGGTCGC CGAAGGGGGA TATCATTCGC
AAGGTGCGGA TTGAGACCAA GGACAAGGTC GCAGTCGAAA TCAACGGCGG CACTGTCGAT
CGTGGTGATA TGGCGCGCGT CGATGTTTTC AGGAAAAAGA ACAAGAAGGG CGTGTGGGAG
TTCTATGTTA TTCCGATCTA TCCGCATCAG ATCGTTGCAT CCGCATTGCC GCCAAATAGG
GCTGTCATTG CGTACAAGGC CGAAAGTGAG TGGACAGCGA TTGATGGCTG TTTCGAGTTT
GCTTGGTCGC TCAATCCAAT GAGTTACCTT GAGCTTGTCA AATCAAACGG CGAGCTGATT
GAGGGATACT TTCGCAGCAT GGATCGCACC ACGGGCGCGA TCAATCTGTC TCCAATGTCA
ACCAACTCGG AAACGATCCG AAGCATCGGA GTCAAGACGC TGTCCAGTTT TCGCAAATTC
ACCGTCGACC GTCTCGGACG TAAATTTGAA ATTCCGCGTG AGGTGCGTAC ATGGCGTGGC
GAGGCCTGCA CCTGA
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| Protein sequence | MSECVTRRIL GIDLGIASCG WGVIEVGEAS GSIIASGVRC FDAPLIDKTG EPKSATRRTA
RGQRRIIRRR RQRMNAVRRL LAEFGVLTGR SPDALHQALL RLSQSVAGSQ VTPWTLRAAA
HERKLTNDEL AVVLGHIARH RGFRSNSKND GGANAADETS KMKKAMETTR EGLARYHSFG
AMIASDPKFA DRKRNRDKDY SHTAKRSDLE DEVRTIFRSQ TRFGSLVASE KLSQAFADAA
FFQRPLQDSE DMVGSCPFEP GQKRTARRAP SFELFRFLSR LANLKLTVGR APERRLTPDE
IALAAKGFGE TKKSITFKSL REALDLDPNA RFSGVAKEKE STLDVAARTG GAAYGTKTLK
DALGDAPWRS LSRMPEKLDR IAEILSFRED MKAIRNGLEE VGLDGLVVDA LMQATANGDF
KDFTRAAHIS ALAARNIIPG LREGLVYSDA CTRVGYDHAA RPAVPLSQIG SPVTRKALSE
ALKQVRAVAR EYGPIDYFHI ELARSIGKSA EERKKLTDGI EARNVEKEKR RKEAAEHLGR
APSDDELLRY ELAKEQNFKC IYSGDPIDPA GISANDTRYQ VDHILPWSRF GDDSYVNKTL
CTARSNQNKR GRTPFEWFDA DKTEAEWMEY SARVEDLKEV KGRKKRNYSI KDAASVEDKF
KARNLTDTQW ATRLLADELK RMFPPRECER VVTVRADGGN DGLSIVEERR VFTRPGAITS
KLRRAWGLEG LKKQDGKRVE DDRHHAVDAL VLAATTESLL NRLTVEVQQR EREGRQDDIF
HCSQPWPGFR VDVQRTVYGS ETMPGIFVSR AERRRARGKA HDATVKQIRD IDGERIVFER
KPIEKLTDKD LERIPVPEPY GKAADPKKLR DELVENLRAW IAAGKPKDKP PRSPKGDIIR
KVRIETKDKV AVEINGGTVD RGDMARVDVF RKKNKKGVWE FYVIPIYPHQ IVASALPPNR
AVIAYKAESE WTAIDGCFEF AWSLNPMSYL ELVKSNGELI EGYFRSMDRT TGAINLSPMS
TNSETIRSIG VKTLSSFRKF TVDRLGRKFE IPREVRTWRG EACT
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