Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_1027 |
Symbol | |
ID | 4021502 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 1169106 |
End bp | 1169915 |
Gene Length | 810 bp |
Protein Length | 269 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637961218 |
Product | HAD family hydrolase |
Protein accession | YP_568166 |
Protein GI | 91975507 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1877] Trehalose-6-phosphatase |
TIGRFAM ID | [TIGR00685] trehalose-phosphatase [TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.794711 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTTCGA AGCTCGCCGA AACTTCATCG CGGCCCACGA CCAATTCCGT GCCGGTGCCG AGCGCGTTGG TGCCGCATCT CGATCAGTGC GCGATGCTGC TGGACATCGA CGGCACCCTG CTCGATCTCG CCCCGACGCC GCGCGAAGTC TGGGTTCCAC CGGAACTCGA GCGAACGCTG CGCGGGCTGC ACGCGCGAAC CTCCGGCGCG CTGGCGCTGG TCAGCGGCCG GTCGATCAAC GACATCGACC TGATCTTCGC GCCGCTGAAG TTGCCCGCGG TCGGCGGCCA CGGCGCGGAG ATGCGACTGT TGTCCGGCGG CGATCTGGTA TCGACCCACG CGCCGCCGAT GGATCCCGAA TTGAAGAACC GTCTCGCCGC GATCGCGCGG ATCAGCCCCG GTATTTTGCT GGAAGACAAG GGCTACTCAC TGGCGTTGCA CTATCGTCTG GCGCCCCACA CCGAGAAGGC GATCTACGAA TCCGTCGCGG CGATCCGCGC CGAGAATCCG CACGCGCCGC TGGAAGTCTT GCCCGGCAAG TCGGTGTGCG AGATCAAGCA TTCCGGTTTC ACCAAAGCCA CCGGCGTGAT CGAGCTGATG AAGCACGAGC CGTTCAAGGG GCGCCGGCCG GTGTTCCTCG GCGACGACGT CACCGACGAA ACAGTGTTTG CGATCATGCC GGAACTACGC GGCCTGGCGT TTTCGGTCGG ACGCCACAGC GACATGGTCG CGGGACATTT CGACGAGCCG CGCGACGTGC GCGCGTGGCT CGCGCGTCTG CTCGATCCGC AGCAGGCTTC CGCAACTTAA
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Protein sequence | MTSKLAETSS RPTTNSVPVP SALVPHLDQC AMLLDIDGTL LDLAPTPREV WVPPELERTL RGLHARTSGA LALVSGRSIN DIDLIFAPLK LPAVGGHGAE MRLLSGGDLV STHAPPMDPE LKNRLAAIAR ISPGILLEDK GYSLALHYRL APHTEKAIYE SVAAIRAENP HAPLEVLPGK SVCEIKHSGF TKATGVIELM KHEPFKGRRP VFLGDDVTDE TVFAIMPELR GLAFSVGRHS DMVAGHFDEP RDVRAWLARL LDPQQASAT
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