| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1018 |
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| Symbol | |
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| ID | 4021493 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 1156630 |
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| End bp | 1157976 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637961209 |
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| Product | homogentisate 1,2-dioxygenase |
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| Protein accession | YP_568157 |
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| Protein GI | 91975498 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3508] Homogentisate 1,2-dioxygenase |
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| TIGRFAM ID | [TIGR01015] homogentisate 1,2-dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.266165 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACGTCA ACGCCGCGCC TGAGATCGTC GGCCGTGCTT CGCAGGGCGT CACGCCGGGC
TACATGTCCG GCTTCGGCAA TTCGTTCGAG ACCGAGGCGC TGCCCGGCGC GTTGCCGGTC
GGCCGCAATT CGCCGCAGCG TGCGGCCTAT GGGCTCTATG CCGAGCAGTT GTCCGGCTCG
CCCTTCACCG CGCCGCGCGG CGCCAATGAG CGCTCGTGGC TGTATCGCAT CCGACCGTCG
GTGAAGCATT CCGGCCGGTT CGCGAAAGCC GATATGGGGT TGTGGCGCTC GGCGCCTTGC
CTCGAACACG ACATGCCGAT CGCTCAGCTC CGGTGGGATG CGCCGCCGAT GCCGACCGAG
GAGGTGACCT TCGTGCAGGG CGTGCGGACG ATGACCACGG CCGGCGATGT GAACACCCAA
GCCGGCATGG CCGCGCATAT GTACCTGATC AGCCGGTCGA TGGTCGATCA GCATTTCTAC
AATGCCGATG GCGAGCTGAT GTTCGTGCCG CAGCAAGGTC GATTGCGGCT CGTCACCGAA
TTCGGCGTGA TCGCGATCGA GCCGGCCGAG ATCGCGGTGA TCCCGCGCGG CGTCAAGTTC
CGCGTCGAGC TGGTCGATGG TCCGGCGCGC GGTTATCTCT GCGAGAATTA CGGCGGCGCG
TTCACCCTGC CGGAGCGCGG CCCGATCGGC GCCAATTGCC TCGCCAATTC GCGCGATTTC
CTGACGCCGG TCGCATCCTA CGAGGACAAG GACACGCCGA CCGAGCTGTT CGTGAAATGG
GGCGGGGCGC TGTGGCGGAC GAGTTTGCCG CATTCGCCGA TCGACGTGGT CGCCTGGCAC
GGCAACTACG CGCCGTATAA ATACGATCTG CGAACGTTCT CGCCGGTCGG CGCGATCGGC
TTCGACCATC CCGATCCGTC GATCTTCACC GTGCTGACCT CGCCGTCGGA GACCGCGGGC
ACGGCGAATA TCGACTTCGT GATCTTTCCC GAGCGCTGGA TGGTGGCGGA AAACACCTTC
CGCCCGCCCT GGTATCACAT GAACATCATG TCGGAGTTCA TGGGGCTGAT CTACGGCGTC
TATGACGCCA AGCCGCAGGG CTTCGCTCCG GGCGGCGCGA GCCTGCACAA CATGATGCTG
CCGCACGGGC CGGATCGCGA AGCGTTCGAT CATGCGTCGA ACGGCGAGCT GAAACCGGTC
AAGCTCACCG GCACGATGGC CTTCATGCTG GAGACCCGCT ATCCGCAGCG CGTCACCGAA
TACGCGGCGA CCGCCGACAC CTTGCAGGAT GACTACGCCG ATTGCTGGCG CGGCCTCGAG
AAGCGCTTCG ATCCGAGCCG GCCATGA
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| Protein sequence | MNVNAAPEIV GRASQGVTPG YMSGFGNSFE TEALPGALPV GRNSPQRAAY GLYAEQLSGS
PFTAPRGANE RSWLYRIRPS VKHSGRFAKA DMGLWRSAPC LEHDMPIAQL RWDAPPMPTE
EVTFVQGVRT MTTAGDVNTQ AGMAAHMYLI SRSMVDQHFY NADGELMFVP QQGRLRLVTE
FGVIAIEPAE IAVIPRGVKF RVELVDGPAR GYLCENYGGA FTLPERGPIG ANCLANSRDF
LTPVASYEDK DTPTELFVKW GGALWRTSLP HSPIDVVAWH GNYAPYKYDL RTFSPVGAIG
FDHPDPSIFT VLTSPSETAG TANIDFVIFP ERWMVAENTF RPPWYHMNIM SEFMGLIYGV
YDAKPQGFAP GGASLHNMML PHGPDREAFD HASNGELKPV KLTGTMAFML ETRYPQRVTE
YAATADTLQD DYADCWRGLE KRFDPSRP
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