Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_1013 |
Symbol | |
ID | 4021488 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 1150835 |
End bp | 1152772 |
Gene Length | 1938 bp |
Protein Length | 645 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637961204 |
Product | Outer membrane autotransporter barrel |
Protein accession | YP_568152 |
Protein GI | 91975493 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3637] Opacity protein and related surface antigens |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.645383 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.106647 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACACG CGCGGACCCG AATTCTGGCA GGCTTCGCTT TCGCGATGGC CGCCTCCGTC TCCACCGGCG CCTTGGCCGA ATGTACCGGC ACAGGCAGCT TCGTTCCGGG CGCCGTGATT CCGGGCACCA ATTTCAGTCC GAGCGCGCTC TTGCCGTTCG CCGCGGGCGG TGCGGTGAAT TCCCTCGTCT CGGCGATCAA CACCGCCAAC ACGGCATTCC TCACCCAATC GACCGCCTTC GTGAGCGCCC CGCGCAATCC GGCGCCGAAT CAGGAAGGCG GCGGCGTCTG GACCCGTGCG ATCGGCGGTG AAGTCACCAC CAAATCGACC AGCACGACCT CCAACGTGTC GCTCGGGGGT GTCGGACTGC CGGGCTCGGT GAACTGCAAC AACGAGAACA AGCTCAGCTT CGCTGGCGTC CAGGTCGGGG CGGATACCTC GATTTTGAAC TACAACGGCT GGAATATGCA TCTCGGCTCG ACCGTCGGCT ATCTCGGCGC CAAGTCCCGC GACAAGTCGT CGGCCGGTGC GCTGAACCCG CTTGGCGGCA CTTTCGAAGA CACGCTGCAG GTGCCGTTTG CGGGCGTCTA TGTCGCGATC ACCAAAGGCG GTTTCTTCGC CGACGGCCAG GTTCGCCTCG ATTATTATCA GAACTCGCTG AGTGATCCGA TCGTCGGCGG TATCTTCAGC CAGAAGCTGG ATGCCCGTGG CCTCTCCTTC ACCGGTAACG TCGGCTACAA CCATGCGTTG GAGAACAACT GGTTCATCGA GCCCTCGGCC GGTATCGTGG TCTCGAAGGT CAAGGTCGAT CCGCTCAACG TGACCGGCTC GCTGGTGTTG CCCGCGACCT TCACGCCGGG CGTCACGTTC CCCGGCCAGT TGCAGGTCGA CGATATCAAC AGCACGCTCG GTCGCCTCAG CTTGCGCGGC GGCACCAGCA TCGCATCCGG CAACATGATC TGGCAGCCCT TCGCCATTGC GAGCGTCTAT CATGAATTCA GCGGGGCGGT GACTTCCACG TTCAACGGCG ATGCGGCGTT CAACGCGACC GGCATCCCGT CGGCGACCGG CACGATCTCC AGCACCAACC TCGGCACCTA CGGCCAGTTC GGGCTCGGCG TCGCCGGCCA GCTCGTCAAC ACCGGCCTGC TCGGCTACGT CCGTGCCGAC TATCGCACCG GTGATCATAT CGACGGCTAC AGCCTGAACG GTGGCGTCCG CTACCAGTTC GCGCCCGACG CGATCGTCGC TGCGCCGCTC TACACCAAGG CCGCGAAGGC TCCGGTGCTG GTCCGCTCGG CCTATAACTG GACCGGCTTC TTCATCGGCG GCAGCTTCGG CGCACTGAAT GGCCGGACCG ACTGGACATT CCAGCCGGTC GGCACGCGCA CCGATCCGCG TTTCGCCGGC GCGATCGGCG GCGGCCAGAT CGGTTATGAC CATCAGTTCG GCAAGTGGGT GGTCGGCGTC GAAGGCAACC TGTTCGCGAC CAACGCCAAC GGCGCCCGTC CCTGCCCGAA TGGCGTGTTC TTCACGTGTG AAAACAATGT GAGCTGGATG GGCACTGCGA CCGCGAAGCT CGGCTACGCG TTCTGGGACC GCTCGCTCTG GTACGTCCGC GGCGGCGGCG CCTTCGGCGA TCTCAAGGTC ACCACCAACT GCAACACCGG TCCGGTGGTT CCCAATCCGG CATTCCTCGT CGTGGCGGGT TGCGGCGAAA GCGCCAGCCG CAACCGTGCC GGCTGGACCA TTGGGTTCGG TTCGGAGTTC GCGCTGAGCA AGAACTGGAC GGTGCGCGCC GAGACCAACT ATTTCGACAT GGGTCGCGAG CGCTACACGC TGCCGACCTC GACCATCGAC GTCAAGGAAA ACGGTTTCAT CTCGACCGTC GGCCTCAACT ATCGCTTCGC GCCCACGGCG CTGGTCGCAA AATACTGA
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Protein sequence | MQHARTRILA GFAFAMAASV STGALAECTG TGSFVPGAVI PGTNFSPSAL LPFAAGGAVN SLVSAINTAN TAFLTQSTAF VSAPRNPAPN QEGGGVWTRA IGGEVTTKST STTSNVSLGG VGLPGSVNCN NENKLSFAGV QVGADTSILN YNGWNMHLGS TVGYLGAKSR DKSSAGALNP LGGTFEDTLQ VPFAGVYVAI TKGGFFADGQ VRLDYYQNSL SDPIVGGIFS QKLDARGLSF TGNVGYNHAL ENNWFIEPSA GIVVSKVKVD PLNVTGSLVL PATFTPGVTF PGQLQVDDIN STLGRLSLRG GTSIASGNMI WQPFAIASVY HEFSGAVTST FNGDAAFNAT GIPSATGTIS STNLGTYGQF GLGVAGQLVN TGLLGYVRAD YRTGDHIDGY SLNGGVRYQF APDAIVAAPL YTKAAKAPVL VRSAYNWTGF FIGGSFGALN GRTDWTFQPV GTRTDPRFAG AIGGGQIGYD HQFGKWVVGV EGNLFATNAN GARPCPNGVF FTCENNVSWM GTATAKLGYA FWDRSLWYVR GGGAFGDLKV TTNCNTGPVV PNPAFLVVAG CGESASRNRA GWTIGFGSEF ALSKNWTVRA ETNYFDMGRE RYTLPTSTID VKENGFISTV GLNYRFAPTA LVAKY
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