Gene RPD_0972 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0972 
Symbol 
ID4021447 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1102940 
End bp1103692 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content68% 
IMG OID637961163 
Producthypothetical protein 
Protein accessionYP_568111 
Protein GI91975452 
COG category[S] Function unknown 
COG ID[COG5343] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.221303 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGTGT CCGACGCCGA CGATGCGCTG GCTGCGGATT TCGTGATCGG CCTCCTGGAG 
GGCGCGGAGC TTGCTGCCGC CGAACAGCGC CTCGCGACCG ACGACGGTTT CGCCAAGGCC
GTCAACGCAT GGCGCGAACG CCTCGCCGAA TTCGACGCCA CTGCGGAGCT GATGCAGCCG
CGCCCCGGGC TGTGGCAGCG CATCGCAGCG TCGACGCAGA GTATGCCGGC CGATCCGCGG
CCCGCCGCGC GGCCCAGGGC GGTCGGCCCG CGGCTGTGGG ACAACATCCG GTTCTGGCGT
GTCGCGGGAA TGAGCGGCGC CGTCGCCGCA GCATTGGCCG TGGTGATGAT CGTCGGCGCG
TTGACGACGA CGCGCCAACT CCGCAACGAG ATGGCCGCCT TGGCGGAGCG CAAGCCGGTC
TATGTCGCGG TGCTGGTCGA CGATCAGACC AAACAGGCCG GCGCGATCGT CAACACCTTT
GCGAATGGCC GGGTCGAGCT GATTCCGCTG CGCGCGATCG ACGTGCCCGC CGGTCGCACG
CTGCAAATCT GGACGTTGTG GGATCGCTCG GTCGGTCCGA AATCGATCGG CCTCACCGAT
CAGCCGCGAG CGCTGCAGCT CGATCTGAAG TCGTTGCCGG AAACCGTGCA GGATCAGCTG
TTCGAAATCA CCTTGGAGCC CCAAGGCGGC TCGCCGATCG GCCGTCCGAC CGGCCCGATT
CTGTTCAAGG GCAATGCCGC GCGGGCGCTG TAG
 
Protein sequence
MSVSDADDAL AADFVIGLLE GAELAAAEQR LATDDGFAKA VNAWRERLAE FDATAELMQP 
RPGLWQRIAA STQSMPADPR PAARPRAVGP RLWDNIRFWR VAGMSGAVAA ALAVVMIVGA
LTTTRQLRNE MAALAERKPV YVAVLVDDQT KQAGAIVNTF ANGRVELIPL RAIDVPAGRT
LQIWTLWDRS VGPKSIGLTD QPRALQLDLK SLPETVQDQL FEITLEPQGG SPIGRPTGPI
LFKGNAARAL