Gene RPD_0958 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0958 
Symbol 
ID4021433 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1079016 
End bp1081850 
Gene Length2835 bp 
Protein Length944 aa 
Translation table11 
GC content65% 
IMG OID637961149 
Productputative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase 
Protein accessionYP_568097 
Protein GI91975438 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only 
COG ID[COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases
[COG0543] 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAGCG TCACCGGCAC GATCCCCAAC GAGGTGCTGC GCTACGAACA GGCGCGCAGC 
ACACTCGAAA CATCGCGTAA CGAGCTGGAA GAGCTGCAGC ACAGCGAGGC TGTCGGCGTC
TTCCAGAAGC AGATTGCGCT GTTGCAGAAG CGGCTGCTGA ACGACCCGGC GTCGCTGCGC
AACATGTTCA TCTCCGACGG CACCCAGGCG ATCGTCTGGG AGTTCCAGCA AAGCGAACTC
GGCGCAGCTT TCACCACGAT GCTGTGGGAG CTGCTCAAGC GCGACGACGA CATGAGCGCG
ATCCTGCAGC GCTTCATCTG GGCGCTGCCG CTCAAGTTCA AGCGCAAGTT CATCAAGGCG
ATCGACGTGC ATCTGCGCGA ACGCTATCCG ATGTTCGAAA ACCTGTCGGA AGGCTGGCCG
GGCGAGACAT TCATCCCGCC TTACATCCGC CCGGCTGAAG AGCGGGCGGT CGACTTCGAC
CTCGTCAACC AGGGCTATCT CGGTTACCAG TCGATCGGCT ACTCGTTGCG TGAATGCGAG
CTGTTCGTCT GGCTGGAAGT GCTGCGCGAC AAGCAGTGCG ACGACAAGCC GTGCGAGATC
GGCATCCTGG TCCACGGCAA GAGCGAGCCG AAGGGCGGCT GCCCGGTGAA GATCCACATC
CCCGAGATGC TGGACCTGCT CGGCACCGGC CGGCATCGCG AAGCGCTGGA GCTGATCGAG
AGCTGCAACC CGCTGCCGAA CGTCACCGGC CGCGTCTGCC CGCAGGAACT GCAGTGCCAG
GGCGTCTGCA CCCATACCAA GCGCCCGATC GAGATCGGCC AGCTCGAATG GTATCTGCCC
GAGCACGAGA AACTGGTGAA CCCCAACGCC AATGACCGCT TCCTCGGTCG GGTCTCGCCA
TGGGCGGCGG CCGCGAAACC GCCGATCGCG GTGGTCGGCT CCGGCCCGTC GGGCCTGATC
AACGCCTATC TGCTGGCGGT CGAAGGCTTC CCCGTCACGA TCTTCGAGGC GTTCCACGAT
CTCGGCGGCG TGCTGCGTTA TGGCATTCCG GAATTCCGGC TGCCCAACAC GCTGATCGAC
GACGTGGTCG AGAAGATCAC GCTGCTCGGC GGTCGCTTCG TGAAGAATTT CGTGGTCGGC
AAGACCGCGA CGCTGGAAGA CCTCAAGGCC GAGGGCTTCT GGAAGATCTT CGTCGGCACC
GGCGCCGGGC TTCCGACCTT CATGAACGTG CCGGGCGAGC ATCTGCTCGG CGTGATGTCG
GCTAACGAGT TCCTGACCCG CGTCAATCTG ATGCGCGGCC TGGACGATCG CTACGAGACG
CCATTGCCTG AAACCAAAGG CAAGAACGTG TTCGTGATCG GCGGCGGCAA CACCGCGATG
GACGCGGCGC GCACCGCCAA GCGACTCGGC GGCAACGTCA CCATCGTGTA TCGCCGCACC
CAGAGCGAAA TGCCGGCGCG CGTCGAGGAG CTGCATCACG CGCTCGAAGA AGGCATCAAT
CTCGCGGTGC TGCGGGCGCC GCGTGAGTTC ATCGGCGACG ACCACACCCA CTTCGTCACC
CACGCGCTGC TCGACGTCAA CGAACTCGGC GAACCGGACA AGTCCGGCCG CCGCAGCCCG
AAGCCGACCG GCGAGATCGA ACGCGTGCCG GTCGACCTGG TGATCATGGC GCTGGGCAAC
ACCGCCAACC CGATCATGAA GGACGCCGAG CCCGGCCTGA AGACCAACAA ATGGGGCACC
ATCGAGGTCG AGCAGGGTTC GCAGCGCACC TCGATCAAGG ACGTCTACTC GGGCGGCGAC
GCCGCGCGTG GCGGCTCCAC CGCGATCCGT GCGGCCGGCG ACGGCCAGGC CGCGGCCAAG
GAAATCGTCG GCGAGATCCC GTTCACCCCG GCTGAGATCA AGACCCGCGT CGAACGTGCG
GCGCGCTATA CCGAGCTCGG CCAGATCGCG CAGACCATCG TCAACAAGGT GCCGCTGGCC
GGCGGCATCG TCGAGTTCAC GGTGCGCGCC CCGATGGTGG CGCGTTCGGC GCAGGCCGGA
CAATTCGTCC GCGTGTTGCC GTGGGAGAAG GGCGAACTGA TCCCGCTGAC GCTCGCCGAC
TGGGATGTCG AAAAGGGCAC CATCGATCTG GTGGTGCAGG GCATGGGCAC CTCGTCGCTG
GAGATCAACC GGATGGCGAT CGGCGACGCG TTCTCTGGCG TCGCCGGCCC GCTCGGCCGC
GCCTCGGAGC TGCATCGCTA CGAGGGCAAC CAGACCGTGG TGTTCTGCGC CGGCGGCGTC
GGCCTGCCGC CGGTCTATCC GATCATGCGG GATCATCTGC GGCTCGGGAA CCACGTCACG
CTGATCTCCG GCTTCCGCGC CAAGGAGTTC CTGTTCTGGA CCGGCGACGA CGAGCGCGTC
GGCAAGCTCA AGCAGGAGTT CGGCGACCAG CTGTCGCTGA TCTACACCAC CAATGACGGC
AGCTATGGCG TCAAAGGCTT CGTCACCGGA CCGCTCGAAG AGATGATGAA GGCCAACCAG
CAGGGCATCG GCCGCACCAT CGCGGAGGTG GTCGCGATCG GCCCGCCGCT GATGATGCGG
GCGGTCTCCG ACCTGACCAA GCCGTATGGC GTGAAGACGG TGGCGAGCCT CAACTCGATC
ATGGTGGACG CCACCGGCAT GTGCGGCGCC TGCATGGTGC CGGTGACGAT CGACGGCAAG
ATGGTGCGCA AACACGCCTG CATCGACGGC CCGGAGATCG ACGCCCACAT CATCGACTGG
GACAAGTTCC TGCCGCGCTT CAACGCCTTC AAGGCGCAGG AGCTGGAGAG CAAGGCCAAG
CACGGCTTCG CGTAA
 
Protein sequence
MSSVTGTIPN EVLRYEQARS TLETSRNELE ELQHSEAVGV FQKQIALLQK RLLNDPASLR 
NMFISDGTQA IVWEFQQSEL GAAFTTMLWE LLKRDDDMSA ILQRFIWALP LKFKRKFIKA
IDVHLRERYP MFENLSEGWP GETFIPPYIR PAEERAVDFD LVNQGYLGYQ SIGYSLRECE
LFVWLEVLRD KQCDDKPCEI GILVHGKSEP KGGCPVKIHI PEMLDLLGTG RHREALELIE
SCNPLPNVTG RVCPQELQCQ GVCTHTKRPI EIGQLEWYLP EHEKLVNPNA NDRFLGRVSP
WAAAAKPPIA VVGSGPSGLI NAYLLAVEGF PVTIFEAFHD LGGVLRYGIP EFRLPNTLID
DVVEKITLLG GRFVKNFVVG KTATLEDLKA EGFWKIFVGT GAGLPTFMNV PGEHLLGVMS
ANEFLTRVNL MRGLDDRYET PLPETKGKNV FVIGGGNTAM DAARTAKRLG GNVTIVYRRT
QSEMPARVEE LHHALEEGIN LAVLRAPREF IGDDHTHFVT HALLDVNELG EPDKSGRRSP
KPTGEIERVP VDLVIMALGN TANPIMKDAE PGLKTNKWGT IEVEQGSQRT SIKDVYSGGD
AARGGSTAIR AAGDGQAAAK EIVGEIPFTP AEIKTRVERA ARYTELGQIA QTIVNKVPLA
GGIVEFTVRA PMVARSAQAG QFVRVLPWEK GELIPLTLAD WDVEKGTIDL VVQGMGTSSL
EINRMAIGDA FSGVAGPLGR ASELHRYEGN QTVVFCAGGV GLPPVYPIMR DHLRLGNHVT
LISGFRAKEF LFWTGDDERV GKLKQEFGDQ LSLIYTTNDG SYGVKGFVTG PLEEMMKANQ
QGIGRTIAEV VAIGPPLMMR AVSDLTKPYG VKTVASLNSI MVDATGMCGA CMVPVTIDGK
MVRKHACIDG PEIDAHIIDW DKFLPRFNAF KAQELESKAK HGFA