| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0917 |
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| Symbol | |
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| ID | 4021392 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 1034576 |
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| End bp | 1036204 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637961108 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_568056 |
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| Protein GI | 91975397 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAATG TGGTGAGCCC GTCCTGGTGG GCGGCCGGCG TGCTGTACCA GATCTACCCG
CGTTCGTTTC AGGACAGTGA CGCCGACGGC ATCGGCGATC TGCGCGGAAT CATCGACCGG
CTCGACTATC TGTCCGATCT CGGCGTCGAC GCGATCTGGC TGTCGCCGAT CTTTCCATCG
CCGATGGCGG ATTTCGGCTA CGACGTCGCC GACTATGTCG GGATCGATCC GATCTTCGGC
AGCATGGCGG ATTTCGACGC GCTGATGATC ACGGCCCATG CGCGCGGGCT CAAGGTCATT
CTCGATCTGG TGCCGAACCA TTCGTCCGAT CAGCATCCGT GGTTCGTCGA AAGCCGCGCC
TCGCGGGACA ATCCCAAGCG CGACTGGTAT CTGTGGCGCG ATCCTGCGCC GGGCGGCGGC
CCGCCGACCA ACTGGCTGTC GGAATTCGGC GGCAGCGCTT GGGACTACGA CGAAGCCACC
GGCCAATATT ACTATCACGC CTTCCTCGCG CAGCAGCCGG ACCTGAACTG GCGCAACCCG
CAGGTGCGCG CCGCGATCTA CGACGCGATG CGGTTCTGGC TGCGCAAGGG CGTCGACGGT
TTCCGCGTCG ACGTGATCTG GCATCTGATC AAGGACGACA TGTTCCGCGA CAACCCGCCC
AATCCGGAGT TTTCGCCCGA CATGCCGCCG CACGCCGCGC TGCTGCCGGT CTACTCCGTG
GACCGGCCGG AGACGCTGGA GATCGTCGCC GAGATGCGCG CGGTGCTCGA CGAATTCGAC
CAGCGCCTGT TGATCGGCGA GATCTATCTG CCGATCGAGC GGCTGGTCGC GTATTACGGC
GCGGACACGC AGGGCAGGTT GCAAGGCGCG CAGTTGCCGT TCAACTTCGC GCTGCTGTCG
ACGCCATGGC GCGCGCCCGC CATCGCGGCG CTGATCGCGC GCTACGAGGC GGCGCTTCCG
GAGGGCGCGT GGCCCAACTG GGTGCTCGGC AATCACGACC GGCCGCGGGT CGCCAGCCGG
GTCGGCGAGG CGCAGGCGCG GGTCGCGGCG ATGCTGCTGC TGACGCTGCG CGGCACGCCG
ACGCTGTATT ATGGCGACGA ACTCGGCATG ACTCAGGTGG CGATCGCGCC GCAGGATGTG
CGGGACCCGT TCGAGAAGAA CGTCCCCGGC ATCGGCGTCG GCCGCGACGG CTGTCGCACG
CCGATGCAGT GGGACGCCTC GGCCAATGCC GGTTTCTCCG ACGCCAGGCC GTGGCTGCCG
CTGGCGCCGG ACGCGGCGCC GGACAACGTC GCCAATCTGC GCGCCGACGC GCAGTCGATC
CTCAATTTGT ATCGCGCGCT GCTGCGGCTG CGCCGCCGGC TGCCGCAACT GGCGCAAGGC
GCTTACCAGC CGCTCGCCGC GGAAGGCGAT CTATTGCTGT ATCGCCGGCA TGATCAGGGG
CAGTCGGTGC TGGTCGCGCT CAATCTCGGC GCCGATCCGG TGTCGGTCGG CTCCGACGCA
TTCGGCCTCG ACGGCGAGGT GCTGCTCTCG ACATTCATGG ACCGCGCCGG CGAACGGATC
GGCGCCACGC TCGATCTGCG CGGCGATGAG GGCGTGATCG TCGGCCGCGC GCCGGAGCCG
GTGGTCTGA
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| Protein sequence | MDNVVSPSWW AAGVLYQIYP RSFQDSDADG IGDLRGIIDR LDYLSDLGVD AIWLSPIFPS
PMADFGYDVA DYVGIDPIFG SMADFDALMI TAHARGLKVI LDLVPNHSSD QHPWFVESRA
SRDNPKRDWY LWRDPAPGGG PPTNWLSEFG GSAWDYDEAT GQYYYHAFLA QQPDLNWRNP
QVRAAIYDAM RFWLRKGVDG FRVDVIWHLI KDDMFRDNPP NPEFSPDMPP HAALLPVYSV
DRPETLEIVA EMRAVLDEFD QRLLIGEIYL PIERLVAYYG ADTQGRLQGA QLPFNFALLS
TPWRAPAIAA LIARYEAALP EGAWPNWVLG NHDRPRVASR VGEAQARVAA MLLLTLRGTP
TLYYGDELGM TQVAIAPQDV RDPFEKNVPG IGVGRDGCRT PMQWDASANA GFSDARPWLP
LAPDAAPDNV ANLRADAQSI LNLYRALLRL RRRLPQLAQG AYQPLAAEGD LLLYRRHDQG
QSVLVALNLG ADPVSVGSDA FGLDGEVLLS TFMDRAGERI GATLDLRGDE GVIVGRAPEP
VV
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