Gene RPD_0884 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0884 
Symbol 
ID4021358 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp996686 
End bp998080 
Gene Length1395 bp 
Protein Length464 aa 
Translation table11 
GC content67% 
IMG OID637961074 
ProductOmpA/MotB 
Protein accessionYP_568023 
Protein GI91975364 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.138624 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.799439 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCGGAC TTTTCAGATC GAGCGGCCAG TGGTGGCGCG GCGCCATCAT TCTTATCGCT 
CTATGGGCGA TCGCGGCGTG GACCACCACG CCGGCCGTGG AAGCCGATGT CGCCGAGCGG
TCCGCCGCAG CGCTCAAGAG TACGGTGCTG GACAAGACCC GGCTGACGGC AGCCGGCCGC
GACATTGCAT TCTCTGCCGA TGCGTTCTCC GAAGAGGGCC GCCGCAGCGC GGTCGCCGCG
GTCGAAAGCG TCCCTGGCGT CCGGCTGGTG GTCGACCAGA CCCGGCTGGT TCCGCTGGCG
TCGCCATTCG TCTGGTCGGT CGAGCGTGAT GTGGTTCGCG TGACGCTCGG CGGCAGCGCT
CCACTGCCGG CCAGCAAGGC GAGGCTGGCC GAAGCGGCCC GCAACGAAGT CAGCGGCGTC
GAGGTTGTCG ATCAGATAAG CCTCGCGCGC GGCGCACCCT CTCGTTTCGA CGCCACCGCA
CTGCTGCTGG TGGATCAGAT CGGCAAGCTC AAGGAAGGCA AGATTACGCT GTCCGACACC
AAGATCAGCC TGTCCGGCAT GGCGCGCGAT CTCGGCGGCC GCGAAGCCAT CGCCGCGGCG
CTGAGGAATC TGCCGGAGGG CTATTCGGTC GCCGAGAACG ACATCAAGGC CCCGCCTTAC
GTGTTCCAGG CCAACAAGGA TCCGGTTGCG TCGACGCTGA CGCTGACCGG CTACGTTCCC
GACAACGCCG TCCATGCCGC GTTGGCGGAC ACCGCCGGCC AAAAATTCTT CAGCGAGAAG
GTGGTCGACA ACCTCAAGGC CAGCATCGGC GCGCCGCAGG GCTTCGCAAA CGCCGTCAAA
CCGGCGCTCG GCGCGCTGTC GCGGCTTTCG ACCGGGACCC TGATCGTGTC GGATCGCGAG
GTGCGTCTGT CCGGCGATGC GCTGTTCGAG GCGGCGGTCA GCCAGATCCG AGCTGAACTG
AACAAGGACA TGCCGCAAGG ATGGACCGTC AAGGCCGACC TCTCGGTCAA GCCGGCGGCG
TCCCCGGTCG ATGCGACGGT CTGCCAGCAA TTGTTCAACG ACCTGCTCGG CAAGAGCACC
GTGCGCTTCG ACTCCGCCAG CGCCAGCATC GACAAGGACT CCGCCGGCCT GCTCGACCGG
CTGATCGAGA CCGCGATGCG TTGCCCCGGC GCCGCCATCG AGGTGGCGGG ACACACCGAC
AGCGCCGGCG AGGCCGGCTC CAACCAGGCG CTTTCGGAAC GTCGGGCGCG GGCGGTGGTC
GACTATATGG TGAGGGCCGG CCTGTCGCCG GAGCGTTTCC GGGCTTTCGG CTATGGCAGC
AAGATCCCGC TCGAAGGGAA CGAGACCGAC GCTGGCAAGG CGAAAAATCG CCGCATCGAT
TTCATGATCA GGTGA
 
Protein sequence
MRGLFRSSGQ WWRGAIILIA LWAIAAWTTT PAVEADVAER SAAALKSTVL DKTRLTAAGR 
DIAFSADAFS EEGRRSAVAA VESVPGVRLV VDQTRLVPLA SPFVWSVERD VVRVTLGGSA
PLPASKARLA EAARNEVSGV EVVDQISLAR GAPSRFDATA LLLVDQIGKL KEGKITLSDT
KISLSGMARD LGGREAIAAA LRNLPEGYSV AENDIKAPPY VFQANKDPVA STLTLTGYVP
DNAVHAALAD TAGQKFFSEK VVDNLKASIG APQGFANAVK PALGALSRLS TGTLIVSDRE
VRLSGDALFE AAVSQIRAEL NKDMPQGWTV KADLSVKPAA SPVDATVCQQ LFNDLLGKST
VRFDSASASI DKDSAGLLDR LIETAMRCPG AAIEVAGHTD SAGEAGSNQA LSERRARAVV
DYMVRAGLSP ERFRAFGYGS KIPLEGNETD AGKAKNRRID FMIR