Gene RPD_0874 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0874 
Symbol 
ID4021348 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand- 
Start bp979801 
End bp980541 
Gene Length741 bp 
Protein Length246 aa 
Translation table11 
GC content74% 
IMG OID637961064 
Producthypothetical protein 
Protein accessionYP_568013 
Protein GI91975354 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.234526 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.535466 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGGCCG GTTTTGTCGC CACCGCGACC GCGGCGTTGG CGCAGCCGGC GCCGCCACGC 
GAGATCGGGC GACCGGCGAT CACGGCGACC TCGGACATCG AAGGTCCCTA TGCGGCCATG 
CCGCCGACTT GGCAGCGCCG CTACGTACCG GAAGCGACAT TCGCCCCCGC GGTGCTGTCG 
CCGCGCGAAA TCTCCGCGAT CGCCCGCGAC GAAGGCTTTG CGCCGCTCGG CATCCCACGG 
CAGCGCGGGA TGTTCTACAC GCTGGCCGCG ATCAACCCGG ACGGCGACGA CGGCCGCCTG 
GTGATCGACG GCCGCAGCGG TCGGCTGGTG CGGTTCATGC CGGCCTGGCG GATGGGCGCT 
GCGATGGAAG AGGAGACCCT CGCCAGCTAC GGGCCGATCC AGGGCCTGCC GCCGCTGGCC 
GAAGGACGCC CGCCACGGCC GCCGCGCCCG GTCCCGCAGG TCGCCAGCCG CACCCCGACC 
ACGCCGCTGC CACGGCCCTC GCCGCAGCAA TCGACCAAGG GGCCATCGCC GGCCGCCGCG 
TCGAACGCCG CCGCCGCGGT GGCTCCCAGC AAGGACGCCG CGAAGCCGGC CGCCGACGCC 
ACGCCCAAGC AGGAGACCGC GACCGTGCAG GACAAGCCGG CCGCCTCACC TGTCCCCGCT 
CCGGCGCCGA CCGAGATCAA GCCGTCGACG CCCGCGATCC AGCCGACCGA GCCGATGCCG 
CCGGTGCAGG GGCTGGAGTA G
 
Protein sequence
MSAGFVATAT AALAQPAPPR EIGRPAITAT SDIEGPYAAM PPTWQRRYVP EATFAPAVLS 
PREISAIARD EGFAPLGIPR QRGMFYTLAA INPDGDDGRL VIDGRSGRLV RFMPAWRMGA 
AMEEETLASY GPIQGLPPLA EGRPPRPPRP VPQVASRTPT TPLPRPSPQQ STKGPSPAAA 
SNAAAAVAPS KDAAKPAADA TPKQETATVQ DKPAASPVPA PAPTEIKPST PAIQPTEPMP 
PVQGLE