Gene RPD_0862 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0862 
Symbol 
ID4021336 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp966741 
End bp967751 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content64% 
IMG OID637961052 
Productband 7 protein 
Protein accessionYP_568001 
Protein GI91975342 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.464796 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTACGATC TGTCTGGCTT CGATATTTTT TCCATCGTTC TCGTGCTGTT GGTGATCCTG 
ACGCTGTTCG CCGGGGTCAA GACCGTGCCA CAGGGCTACA ACTGGACCAT CGAGCGGTTC
GGCAAATTCA CCCGCACGCT GTCTCCGGGC CTCAATCTGA TCATTCCGTA TTTCGATCGC
GTCGGCCGCA AGATGAACGT GATGGAGCAG GTGATCGATA TTCCGCAGCA GGAAGTCATC
ACCAAGGACA ACGCCACCGT GACGGTCGAC GGCGTCGCCT TCTTCCAGGT GTTCGACGCG
GCGAAAGCGA GCTACGAGGT CTCCAATCTC GAACAGGCGA TCATCGTGCT GACGATGACC
AACATCCGCT CGGTGATGGG CGCGATGGAT CTCGATCAGG TGCTGTCGCA TCGCGACGAG
ATCAACGAGC GGTTGCTGCG GGTGGTCGAC GCCGCGGTGT CGCCGTGGGG GCTCAAGGTC
AATCGCATCG AGATCAAGGA CATCGTGCCG CCGGCCGATC TGGTCGAGGC GATGGGACGT
CAGATGAAGG CCGAGCGCGT CAAGCGCGCC GACATCCTGC AGGCGGAAGG CCAGCGGCAA
TCGGAGATTC TCCGCGCCGA GGGCGCCAAG CAGGGCCAGA TCCTACAGGC CGAAGGCCGC
CGCGAGGCGG CGTTCCGCGA CGCCGAAGCG CGCGAGCGAT CGGCCGAGGC GGAAGCCCGC
GCCACCCAGA TGGTCAGCGA CGCGATCGCC AAGGGCGACG TCGCCGCGTT GAACTACTTC
ATCGCCGACA AATACATCAA GGCGTTCGGC CAGATCGCGG ACTCTCCGAA CCAGAAGATC
ATCATGCTGC CGATCGAGGC GATGAACGTG CTCGGCTCGC TGGCCGGAAT CGGCGAGATC
GCCAAGGCGA CCTTCGGCGA AAGCGCGGCC TCGGCGCAGG CGGCCGCGCG CCGCGGCTCA
GTGCCGACCA CCGGCGCCGC CCCGACGCCG CCGTCGACGA CGCGCGCGTG A
 
Protein sequence
MYDLSGFDIF SIVLVLLVIL TLFAGVKTVP QGYNWTIERF GKFTRTLSPG LNLIIPYFDR 
VGRKMNVMEQ VIDIPQQEVI TKDNATVTVD GVAFFQVFDA AKASYEVSNL EQAIIVLTMT
NIRSVMGAMD LDQVLSHRDE INERLLRVVD AAVSPWGLKV NRIEIKDIVP PADLVEAMGR
QMKAERVKRA DILQAEGQRQ SEILRAEGAK QGQILQAEGR REAAFRDAEA RERSAEAEAR
ATQMVSDAIA KGDVAALNYF IADKYIKAFG QIADSPNQKI IMLPIEAMNV LGSLAGIGEI
AKATFGESAA SAQAAARRGS VPTTGAAPTP PSTTRA