Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_0837 |
Symbol | |
ID | 4021311 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 938626 |
End bp | 942132 |
Gene Length | 3507 bp |
Protein Length | 1168 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637961027 |
Product | periplasmic sensor hybrid histidine kinase |
Protein accession | YP_567976 |
Protein GI | 91975317 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only [T] Signal transduction mechanisms |
COG ID | [COG0591] Na+/proline symporter [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.303418 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGCACG ATTGGGGCGT GATCGCAGCC GCGCTCGCCT ATATCGGTTT CCTGTTCTAC ATCGCGAGTT TCGGCGACCG GCTGTCGCAA CGCCAGCGCG AGCGGGCCGG CGGCCTGATC TATCCGCTGT CGCTGGCGAT CTATTGCACC TCCTGGACTT TCTTCGGCTC GGTCGGCTCC GCCAGCCGCA CCAGCGCCGA CTTCCTCGCG ATCTATGTCG GCCCGATCCT GCTGATCGGG GTCTGCACGC CGTTGTTGCG CCGCGTCATC AGCCTGGCGA AATCCCAGAA CATCACCTCG ATCGCCGACT TCATCGCGGC GCGCTACGGC AAGAGCCAGC GGGTCGCGGC GACGGTGGCG ATCATCGCGA TTATCGGCTC GGTGCCTTAC ATCGCGCTTC AACTCAAGGC AGTGGCGTCG TCGCTGCAGA CCATCCTCGG CGAAGATCAC AAAATTGCGA ACATTCCGAT CGTCGGCGAC ATCGCTCTGA TCGTCGCGAT GGCGATGGCG CTGTTCGCAG TGCTGTTCGG CACCCGCCGG ACCCGTGCGA CCGAGCACCA GCATGGTCTG ATGCTGGCGA TCGCGACCGA GTCGATCGTC AAGCTGGTGG CCTTTCTCGC TGCCGGCATC TTCGTCACCT TCTGGATGTT CACCCCGGCC GATCTGATCG AGCACGCGAG GAAGATGCCG GAAGCGGTGC GCGCGCTCGA TTCGTCGCCC TCGCTGACCA CCTTCGTGAC GATGACGGTG CTGTCGTTCT GCGCTTTTCT GATGCTGCCG CGGCAGTTCT ATGTCGGCGT GGTCGAGAAC ACCAACGACG CCGAGGTCAG CCGCGCCCGC TGGATGTTCC CTCTCTATTT GATCGCGATC AATCTGTTCG TGATCCCGAT CGCGCTGGCG GGGCTGGTTA CCTTTCCATT CGGCGCGGTC GACAGCGACA TGTTCGTGCT GGCGCTGCCG ATCCAGGCCA ATGCGACGCT GCTCAGCGTC GGAGTGTTCA TCGGCGGCCT GTCGGCGGCG ACCGCAATGG TGATTGTCGA ATGCGTGGCG CTGGCGGTGA TGGTGTCGAA CGATCTGGTG ATGCCGCTGG TGCTGACCCG CCGGGGCGCG CCGCGCAACG ATCAGCGCAG CTTCGGCGAT TTCCTGCTGA TGGTGCGGCG GGTGGCGATC TTCGTCATCA TGATTCTCGC TTATCTTTAC TATCGTGCGC TCGGCAACAC CCAGCTCGCT GCAATCGGCC TGTTGTCGTT CGCGGCGATC GCACAGTTTG CACCCGCGTT CTTCGGCGGC CTGATCTGGC GGCGCGCCAC CGCGGCGGGC GCGATCGGCG GTATGTTGAT CGGATTCGCG ACCTGGGCCT ACACGCTGTT CATCCCGAGT TTCATGGAGA GCAGCACCGC GGGGCTGATG CTGTTGCAGA GCGGCCCTTG GGGGATCGAG GCGCTGCGCC CGCGGGCGCT GTTCGGCGCC GAGCTGCCGC CGCTGGTGCA CGGCGTGGCG TGGAGCCTGT CGCTCAATCT GCTCGCCTAT GTGGCGCTGT CGCTGCTGAG CAAGCCATCG TCGATCGACC GGCTGCAGGC CGAAGTGTTC GTGCCGGCGC TGACGCCGAT GACGCCGGCG TTCCGGCGCT GGCGCACCAC GGTCACCGTG CAGGACATCC TCGGCGCGGT GGGACAGTAT CTCGGCCCGG AGCGGGCGCG GGAATCGTTT CGCGCGTTCG CAATCAGCCG CCGGCTGACG CTCGATCCAT CCGCCCCCGC CGATTTCGAG CTACTGAAGC ACGCCGAGCA CCTGATCGCG TCCTCGATCG GCGCGGCTTC GTCGCGGCTG GTGCTGTCGC TGCTGCTGCG CAAGCGCACG GTGTCGGCAG AAGCCGCACT GAAGCTGCTC GATGATTCCC ACGCCGCCTT GCATTTCAAC CGCGAGATCC TGCAGACCGC GCTCAACCAC GTCCGCCAGG GTATCGCCGT CTTCAATCCA AACCTGCAGT TGATCTGCTC CAACCGTCAG TTCGGCGAGA TCCTCGGACT GCCCCCGCAC ATCATCCAGA TCGGGATTCC GCTGATCGAG ATTCTCGAGT TCCTGTCGAG TACCGGCGCC AATCAGACCG ACGCCGAGGC GCAGACCCAG ATGCGGCTGG CCTCCTACAC CACCGAGGGC GAGCCATTCC TGGAGCGGCT GCAGGACCGG CATTTAGTGA TCGAGGTGCG CGCTAACCGG ATGCCGGATG GCGGGCTGGT GATCACCTTC TCCGACGTCA CCCCGAGCTT CGAGGCGGCC GAAGCGCTGG AGCGGGCCAA CGCGACTTTG GAGAGGCGGG TCCGCGAACG CACCGAGGAA CTGACCCGGC TGAACTCGCA GCTCGCATTG GCGAAGAGCA CCGCCGAGGA AGCCAACATC TCGAAGACCC GCTTCCTCGC GGCGGCAAGC CACGACATCC TGCAGCCGCT CAATGCGGCG CGGCTCTATG CCACCAGCCT GGTCGAACGT CAGAACGGCG GCGAGGATTC GCGGCTGGTC GAGAACATCG ATGAATCGCT CGAGGCGATC GAGGAGATCA TCGGCGCCCT GCTCGATATT TCGCGGCTCG ACGCCGGCGC GATGACGCCG TCGCTGACGA ATTTCGTCGT CGGCGACCTG ATGCGCTCGC TGGAGATCGA ATTCTCGCCG GCCGCGCGCG CCAAGGGGTT GAAGCTCACC TTCGTCCCAT GCTCGCTGCC GGTGCGGTCG GACCGCCTGA TGCTGCGCCG GCTGATGCAG AATCTGATCT CCAACGCGAT CAAGTACACG CCTCAGGGCC GCGTCCTGGT CGGCTGCCGC CGTCAGGGCG AGTCGCTGAA GGTCGCGATC TACGACACCG GCGTCGGCGT GCCGATCCTC AAGCGCGGCG AGGTCTTCAA GGAGTTCCAC CGGCTCGAGC AGGGCGCGCG GATCGCCCGT GGATTGGGCT TGGGACTGTC GATCGTCGAG CGTCTGGCGC GGGTGCTGAA CCACAGCATC GCGCTCGATG CCAACCGCGG CGGCGGTTCG GTGTTCTCCG TGACGGTGCC GATCGCCGCC GTCGCCAACC ACACCACCGC GGTGACCAGC GCGACGCCGC TGTCGCGAGC GTCGATGAGC GGCAGCCTCG TGGTGTGTAT CGAGAACGAT CCGGCGATCC TCGACGGCAT GAAGACGCTG CTGACGACCT GGGACGCCAC CGTCATCGCG GCCGCCGATC TGGAAGCCGC GATCAGGGCC ATCGAGGCGG CGGGCCGGCG CATTACCGGG CTTCTGGTCG ATTACCACCT CGATCGCGGC AACGGCATCG CGGCGATCCG CGACATCCGC CAGCGCTTCG GCGCCAGCAT CCCGGCGATC CTGATCACCG CCGACCGCAG CCCCGGCGTC CGCGCCGCGG CGCGGCAGGA GGAGATCGCG GTGCTGAACA AGCCGGTGAA GGCGGCGTCA CTGCGGGCGC TGCTCAACCA GTGGCACGCC CAGCAGGCGG TAACCGCGGC CGAATAA
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Protein sequence | MLHDWGVIAA ALAYIGFLFY IASFGDRLSQ RQRERAGGLI YPLSLAIYCT SWTFFGSVGS ASRTSADFLA IYVGPILLIG VCTPLLRRVI SLAKSQNITS IADFIAARYG KSQRVAATVA IIAIIGSVPY IALQLKAVAS SLQTILGEDH KIANIPIVGD IALIVAMAMA LFAVLFGTRR TRATEHQHGL MLAIATESIV KLVAFLAAGI FVTFWMFTPA DLIEHARKMP EAVRALDSSP SLTTFVTMTV LSFCAFLMLP RQFYVGVVEN TNDAEVSRAR WMFPLYLIAI NLFVIPIALA GLVTFPFGAV DSDMFVLALP IQANATLLSV GVFIGGLSAA TAMVIVECVA LAVMVSNDLV MPLVLTRRGA PRNDQRSFGD FLLMVRRVAI FVIMILAYLY YRALGNTQLA AIGLLSFAAI AQFAPAFFGG LIWRRATAAG AIGGMLIGFA TWAYTLFIPS FMESSTAGLM LLQSGPWGIE ALRPRALFGA ELPPLVHGVA WSLSLNLLAY VALSLLSKPS SIDRLQAEVF VPALTPMTPA FRRWRTTVTV QDILGAVGQY LGPERARESF RAFAISRRLT LDPSAPADFE LLKHAEHLIA SSIGAASSRL VLSLLLRKRT VSAEAALKLL DDSHAALHFN REILQTALNH VRQGIAVFNP NLQLICSNRQ FGEILGLPPH IIQIGIPLIE ILEFLSSTGA NQTDAEAQTQ MRLASYTTEG EPFLERLQDR HLVIEVRANR MPDGGLVITF SDVTPSFEAA EALERANATL ERRVRERTEE LTRLNSQLAL AKSTAEEANI SKTRFLAAAS HDILQPLNAA RLYATSLVER QNGGEDSRLV ENIDESLEAI EEIIGALLDI SRLDAGAMTP SLTNFVVGDL MRSLEIEFSP AARAKGLKLT FVPCSLPVRS DRLMLRRLMQ NLISNAIKYT PQGRVLVGCR RQGESLKVAI YDTGVGVPIL KRGEVFKEFH RLEQGARIAR GLGLGLSIVE RLARVLNHSI ALDANRGGGS VFSVTVPIAA VANHTTAVTS ATPLSRASMS GSLVVCIEND PAILDGMKTL LTTWDATVIA AADLEAAIRA IEAAGRRITG LLVDYHLDRG NGIAAIRDIR QRFGASIPAI LITADRSPGV RAAARQEEIA VLNKPVKAAS LRALLNQWHA QQAVTAAE
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