Gene RPD_0837 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0837 
Symbol 
ID4021311 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp938626 
End bp942132 
Gene Length3507 bp 
Protein Length1168 aa 
Translation table11 
GC content66% 
IMG OID637961027 
Productperiplasmic sensor hybrid histidine kinase 
Protein accessionYP_567976 
Protein GI91975317 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms 
COG ID[COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.303418 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCACG ATTGGGGCGT GATCGCAGCC GCGCTCGCCT ATATCGGTTT CCTGTTCTAC 
ATCGCGAGTT TCGGCGACCG GCTGTCGCAA CGCCAGCGCG AGCGGGCCGG CGGCCTGATC
TATCCGCTGT CGCTGGCGAT CTATTGCACC TCCTGGACTT TCTTCGGCTC GGTCGGCTCC
GCCAGCCGCA CCAGCGCCGA CTTCCTCGCG ATCTATGTCG GCCCGATCCT GCTGATCGGG
GTCTGCACGC CGTTGTTGCG CCGCGTCATC AGCCTGGCGA AATCCCAGAA CATCACCTCG
ATCGCCGACT TCATCGCGGC GCGCTACGGC AAGAGCCAGC GGGTCGCGGC GACGGTGGCG
ATCATCGCGA TTATCGGCTC GGTGCCTTAC ATCGCGCTTC AACTCAAGGC AGTGGCGTCG
TCGCTGCAGA CCATCCTCGG CGAAGATCAC AAAATTGCGA ACATTCCGAT CGTCGGCGAC
ATCGCTCTGA TCGTCGCGAT GGCGATGGCG CTGTTCGCAG TGCTGTTCGG CACCCGCCGG
ACCCGTGCGA CCGAGCACCA GCATGGTCTG ATGCTGGCGA TCGCGACCGA GTCGATCGTC
AAGCTGGTGG CCTTTCTCGC TGCCGGCATC TTCGTCACCT TCTGGATGTT CACCCCGGCC
GATCTGATCG AGCACGCGAG GAAGATGCCG GAAGCGGTGC GCGCGCTCGA TTCGTCGCCC
TCGCTGACCA CCTTCGTGAC GATGACGGTG CTGTCGTTCT GCGCTTTTCT GATGCTGCCG
CGGCAGTTCT ATGTCGGCGT GGTCGAGAAC ACCAACGACG CCGAGGTCAG CCGCGCCCGC
TGGATGTTCC CTCTCTATTT GATCGCGATC AATCTGTTCG TGATCCCGAT CGCGCTGGCG
GGGCTGGTTA CCTTTCCATT CGGCGCGGTC GACAGCGACA TGTTCGTGCT GGCGCTGCCG
ATCCAGGCCA ATGCGACGCT GCTCAGCGTC GGAGTGTTCA TCGGCGGCCT GTCGGCGGCG
ACCGCAATGG TGATTGTCGA ATGCGTGGCG CTGGCGGTGA TGGTGTCGAA CGATCTGGTG
ATGCCGCTGG TGCTGACCCG CCGGGGCGCG CCGCGCAACG ATCAGCGCAG CTTCGGCGAT
TTCCTGCTGA TGGTGCGGCG GGTGGCGATC TTCGTCATCA TGATTCTCGC TTATCTTTAC
TATCGTGCGC TCGGCAACAC CCAGCTCGCT GCAATCGGCC TGTTGTCGTT CGCGGCGATC
GCACAGTTTG CACCCGCGTT CTTCGGCGGC CTGATCTGGC GGCGCGCCAC CGCGGCGGGC
GCGATCGGCG GTATGTTGAT CGGATTCGCG ACCTGGGCCT ACACGCTGTT CATCCCGAGT
TTCATGGAGA GCAGCACCGC GGGGCTGATG CTGTTGCAGA GCGGCCCTTG GGGGATCGAG
GCGCTGCGCC CGCGGGCGCT GTTCGGCGCC GAGCTGCCGC CGCTGGTGCA CGGCGTGGCG
TGGAGCCTGT CGCTCAATCT GCTCGCCTAT GTGGCGCTGT CGCTGCTGAG CAAGCCATCG
TCGATCGACC GGCTGCAGGC CGAAGTGTTC GTGCCGGCGC TGACGCCGAT GACGCCGGCG
TTCCGGCGCT GGCGCACCAC GGTCACCGTG CAGGACATCC TCGGCGCGGT GGGACAGTAT
CTCGGCCCGG AGCGGGCGCG GGAATCGTTT CGCGCGTTCG CAATCAGCCG CCGGCTGACG
CTCGATCCAT CCGCCCCCGC CGATTTCGAG CTACTGAAGC ACGCCGAGCA CCTGATCGCG
TCCTCGATCG GCGCGGCTTC GTCGCGGCTG GTGCTGTCGC TGCTGCTGCG CAAGCGCACG
GTGTCGGCAG AAGCCGCACT GAAGCTGCTC GATGATTCCC ACGCCGCCTT GCATTTCAAC
CGCGAGATCC TGCAGACCGC GCTCAACCAC GTCCGCCAGG GTATCGCCGT CTTCAATCCA
AACCTGCAGT TGATCTGCTC CAACCGTCAG TTCGGCGAGA TCCTCGGACT GCCCCCGCAC
ATCATCCAGA TCGGGATTCC GCTGATCGAG ATTCTCGAGT TCCTGTCGAG TACCGGCGCC
AATCAGACCG ACGCCGAGGC GCAGACCCAG ATGCGGCTGG CCTCCTACAC CACCGAGGGC
GAGCCATTCC TGGAGCGGCT GCAGGACCGG CATTTAGTGA TCGAGGTGCG CGCTAACCGG
ATGCCGGATG GCGGGCTGGT GATCACCTTC TCCGACGTCA CCCCGAGCTT CGAGGCGGCC
GAAGCGCTGG AGCGGGCCAA CGCGACTTTG GAGAGGCGGG TCCGCGAACG CACCGAGGAA
CTGACCCGGC TGAACTCGCA GCTCGCATTG GCGAAGAGCA CCGCCGAGGA AGCCAACATC
TCGAAGACCC GCTTCCTCGC GGCGGCAAGC CACGACATCC TGCAGCCGCT CAATGCGGCG
CGGCTCTATG CCACCAGCCT GGTCGAACGT CAGAACGGCG GCGAGGATTC GCGGCTGGTC
GAGAACATCG ATGAATCGCT CGAGGCGATC GAGGAGATCA TCGGCGCCCT GCTCGATATT
TCGCGGCTCG ACGCCGGCGC GATGACGCCG TCGCTGACGA ATTTCGTCGT CGGCGACCTG
ATGCGCTCGC TGGAGATCGA ATTCTCGCCG GCCGCGCGCG CCAAGGGGTT GAAGCTCACC
TTCGTCCCAT GCTCGCTGCC GGTGCGGTCG GACCGCCTGA TGCTGCGCCG GCTGATGCAG
AATCTGATCT CCAACGCGAT CAAGTACACG CCTCAGGGCC GCGTCCTGGT CGGCTGCCGC
CGTCAGGGCG AGTCGCTGAA GGTCGCGATC TACGACACCG GCGTCGGCGT GCCGATCCTC
AAGCGCGGCG AGGTCTTCAA GGAGTTCCAC CGGCTCGAGC AGGGCGCGCG GATCGCCCGT
GGATTGGGCT TGGGACTGTC GATCGTCGAG CGTCTGGCGC GGGTGCTGAA CCACAGCATC
GCGCTCGATG CCAACCGCGG CGGCGGTTCG GTGTTCTCCG TGACGGTGCC GATCGCCGCC
GTCGCCAACC ACACCACCGC GGTGACCAGC GCGACGCCGC TGTCGCGAGC GTCGATGAGC
GGCAGCCTCG TGGTGTGTAT CGAGAACGAT CCGGCGATCC TCGACGGCAT GAAGACGCTG
CTGACGACCT GGGACGCCAC CGTCATCGCG GCCGCCGATC TGGAAGCCGC GATCAGGGCC
ATCGAGGCGG CGGGCCGGCG CATTACCGGG CTTCTGGTCG ATTACCACCT CGATCGCGGC
AACGGCATCG CGGCGATCCG CGACATCCGC CAGCGCTTCG GCGCCAGCAT CCCGGCGATC
CTGATCACCG CCGACCGCAG CCCCGGCGTC CGCGCCGCGG CGCGGCAGGA GGAGATCGCG
GTGCTGAACA AGCCGGTGAA GGCGGCGTCA CTGCGGGCGC TGCTCAACCA GTGGCACGCC
CAGCAGGCGG TAACCGCGGC CGAATAA
 
Protein sequence
MLHDWGVIAA ALAYIGFLFY IASFGDRLSQ RQRERAGGLI YPLSLAIYCT SWTFFGSVGS 
ASRTSADFLA IYVGPILLIG VCTPLLRRVI SLAKSQNITS IADFIAARYG KSQRVAATVA
IIAIIGSVPY IALQLKAVAS SLQTILGEDH KIANIPIVGD IALIVAMAMA LFAVLFGTRR
TRATEHQHGL MLAIATESIV KLVAFLAAGI FVTFWMFTPA DLIEHARKMP EAVRALDSSP
SLTTFVTMTV LSFCAFLMLP RQFYVGVVEN TNDAEVSRAR WMFPLYLIAI NLFVIPIALA
GLVTFPFGAV DSDMFVLALP IQANATLLSV GVFIGGLSAA TAMVIVECVA LAVMVSNDLV
MPLVLTRRGA PRNDQRSFGD FLLMVRRVAI FVIMILAYLY YRALGNTQLA AIGLLSFAAI
AQFAPAFFGG LIWRRATAAG AIGGMLIGFA TWAYTLFIPS FMESSTAGLM LLQSGPWGIE
ALRPRALFGA ELPPLVHGVA WSLSLNLLAY VALSLLSKPS SIDRLQAEVF VPALTPMTPA
FRRWRTTVTV QDILGAVGQY LGPERARESF RAFAISRRLT LDPSAPADFE LLKHAEHLIA
SSIGAASSRL VLSLLLRKRT VSAEAALKLL DDSHAALHFN REILQTALNH VRQGIAVFNP
NLQLICSNRQ FGEILGLPPH IIQIGIPLIE ILEFLSSTGA NQTDAEAQTQ MRLASYTTEG
EPFLERLQDR HLVIEVRANR MPDGGLVITF SDVTPSFEAA EALERANATL ERRVRERTEE
LTRLNSQLAL AKSTAEEANI SKTRFLAAAS HDILQPLNAA RLYATSLVER QNGGEDSRLV
ENIDESLEAI EEIIGALLDI SRLDAGAMTP SLTNFVVGDL MRSLEIEFSP AARAKGLKLT
FVPCSLPVRS DRLMLRRLMQ NLISNAIKYT PQGRVLVGCR RQGESLKVAI YDTGVGVPIL
KRGEVFKEFH RLEQGARIAR GLGLGLSIVE RLARVLNHSI ALDANRGGGS VFSVTVPIAA
VANHTTAVTS ATPLSRASMS GSLVVCIEND PAILDGMKTL LTTWDATVIA AADLEAAIRA
IEAAGRRITG LLVDYHLDRG NGIAAIRDIR QRFGASIPAI LITADRSPGV RAAARQEEIA
VLNKPVKAAS LRALLNQWHA QQAVTAAE