| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0797 |
|---|
| Symbol | |
|---|
| ID | 4021271 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 895564 |
|---|
| End bp | 898278 |
|---|
| Gene Length | 2715 bp |
|---|
| Protein Length | 904 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637960987 |
|---|
| Product | DEAD/DEAH box helicase-like |
|---|
| Protein accession | YP_567936 |
|---|
| Protein GI | 91975277 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1201] Lhr-like helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.79097 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.907891 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCCT GCGCGGGCGA CTTGCGTCGG GACGATCTCG ATTCCGAAGG CGCGAATGCC
TACCTTCGCC GGGTGATCAT CGCCGATTCC GACGTGCCCC CTGATTTGCT GCCCGACCGG
TTCAGGCATT GGTTTGCCGC ACGCGGCTGG TCGCCGCGCG CGCATCAGCT CGAACTGCTC
GAAAAGGCCC GCGCGCAACG TTCGGCGCTG CTGATCGCGC CGACCGGCGC GGGCAAGACT
TTGGCCGGAT TCCTGCCGAC GCTGGTGGAG CTGGCCGAGA CCTCACTGCG GGCGGGGCCG
GAGGGCAGGG GCCTTCACAC CCTCTACATC TCCCCGCTGA AGGCGCTCGC CGTCGACATC
GCCCGCAATC TCGAGGCGCC GATCGCGCAA ATGAATCTGC CGATCCGGGT CGAGACCCGC
ACCGGCGACA CCCCGGTGTC GCGGCGGACG CGGCAACGGA AATATCCACC GGATATTCTG
CTGACCACGC CGGAGCAGCT CGCGCTGCTG CTCGCCTCCG ACGACGCGCC GTATCTGTTC
TCATCGCTGC AGCGCATCGT GCTCGATGAG CTGCATGCGC TGGTGACGTC CAAGCGCGGC
GATCTGCTCT CGCTCGGGCT CGCCCGGCTG TGGCGGATCG CCCCGGACCT TCGCGCCACC
GGACTGTCGG CGACGGTCGC CGATCCGGAC GAACTCGCGC GCTTCCTGGT GCCGCAGCCC
GTTTCACCCT CTCCCCTTGT GGGAGAGGGT GGCAGCCGAG GGCTGCCGGG TGAGGGGGAG
GCCACAAGCG CCGAGCCCGC GGCTTACCCC CGACCCTCCC CCGCAAGGGG GGAGGGAGAA
GCAAGGGCCG ACATCGTGGT CGCCGGGGGC GCGGTTCAGC CGATCGTCGA GATGCTCGAT
ACCAAGGAGC GGCTGCCCTG GGCCGGCCAT TCGGCGCGGC ACGCGCTGGC TGAGATCTAC
GATCTGATCA AGGGCAACAA GACCACGCTG GTGTTCGTCA ACACCCGCAG CCAGGCCGAG
ATGCTGTTCC AGGAACTCTG GCGCATGAAC GACGACAATT TGGCGATCGC GCTGCATCAC
GGCTCGCTCG ATGTCGCACA GCGCCGCCGC GTCGAGGACG CGATGGCGGC CGGCAAACTG
CGCGGCGTGG TGTGTACGTC GTCGCTCGAT CTCGGCATCG ACTGGGGCGA TATCGATCTC
GTGATCAATG TCGGCGCGCC GAAGGGCGCC TCGCGGCTGA TGCAGCGGAT CGGCCGCGCC
AATCACCGCA TCGACGAGGC GTCGCGCGCG GTGCTGGTGC CGGCCAATCG CTTCGAGGTG
CTGGAATGCG CGGCTGCGAT CGACGCGGTC GCGGAGAATG CGCAGGATAC GCTGCCGCAG
CGCAAGGGAG CGCTCGACGT GCTCGCCCAG CACATCCTTG GCTGCGCCTG CGGCGAGCCG
TTCTTTGCGA ACGATCTTTA TAGCGAGGTG AGAAGCGCCG CGCCCTACGC CGATCTCACC
CGCGCCGATT TCGACGACAC GCTCGATTTC GTCGCCACCG GCGGCTACGC GCTGAAGAGC
TACGAGCGCT TCGCCCGCAT CAAGCTCGAC AAACAGGGCC GATGGCGGGT CGCCAATCCG
AAGGTGCGGC AGGGCTATCG TCTCAATGTC GGCACCATCG TCGAAGAGGC GATGCTGAAG
GTGAAGCTGG TGCGGTCGTC GCGTAGTTCC GGCACCGGCG CCACCGGCGC GATCGCGCGC
GGCGGCCGGA TGCTCGGCCA GATCGAGGAG TACTTCATCG AGGGGCTGAC GCCGGGTGAT
ACGTTCGTGT TCGGCGGCGA GGTGGTGCGC TACGAGGCGA TGATGGAGGA TCAGGTCTAT
GTCTCGCGCG CCGCCGACAA GGACGCGCGG GTGCCGTCCT ATATGGGCGG CAAGTTTCCG
CTGTCGACCT ATCTGGCCGA GCGGGTGCGC GGCCTGCTCG ATGATCGCCG CGCATGGCAG
GGATTACCCG AGCAGGTGCG CGACTGGCTG GCACTGCAGA GCAAGGCGTC GCGCGTGCCC
GGCCGGCGCG AGCTCGTGGT CGAGACGTTT CCACGCGCCG CCAAATACTA TCTGGTCTGC
TATCCGTTCG AAGGGCGGCT CGCGCATCAG ACGCTCGGCA TGTTGCTGAC CCGGCGGCTG
GAGCGCAGCC GCGCCCGCCC GCTGGGCTTC GTCGCCAATG AATACGCGCT CGCAGTCTGG
GGGCTCGGCG ACATGTCGCA GATGATCCGG CAGGGCCGGC TCGATCTCGA CGCGCTGTTC
GATCCCGACA TGCTCGGCGA CGATCTCGAA GCCTGGCTCG CCGAATCCGC GCTGATGAAG
CGCACCTTCC GCTATGCGGC GATCATCTCC GGGCTGATCG CGCGGCGTTT CGCCGGCGAG
GAGAAGTCGC GCCGGCAGGT GCTGTTCTCG ACCGACCTGG TCTACGACGT TCTCAACAAG
CACCAGCCCG ATCACGTGCT GCTGCGCGCC GCCCGCGCCG ACGCCGCCAC AGGTCTGCTC
GATTTGCGCC GCCTCAGTGA TATGCTGACA CGAATCAAGG GGCGCATCGT CCACAAGGAA
CTCGATCGGG TGTCTCCTTT GGCGGTGCCG GTGATGCTGG AAATCGGCCG CGAGGCCGTG
TACGGCGAGG CCTCCGATGA ACTGCTCGCC GAAGCCGCCG AGGAACTGGT GCGCGAGGCG
ACGCAGCGGT CCTAA
|
|---|
| Protein sequence | MAACAGDLRR DDLDSEGANA YLRRVIIADS DVPPDLLPDR FRHWFAARGW SPRAHQLELL
EKARAQRSAL LIAPTGAGKT LAGFLPTLVE LAETSLRAGP EGRGLHTLYI SPLKALAVDI
ARNLEAPIAQ MNLPIRVETR TGDTPVSRRT RQRKYPPDIL LTTPEQLALL LASDDAPYLF
SSLQRIVLDE LHALVTSKRG DLLSLGLARL WRIAPDLRAT GLSATVADPD ELARFLVPQP
VSPSPLVGEG GSRGLPGEGE ATSAEPAAYP RPSPARGEGE ARADIVVAGG AVQPIVEMLD
TKERLPWAGH SARHALAEIY DLIKGNKTTL VFVNTRSQAE MLFQELWRMN DDNLAIALHH
GSLDVAQRRR VEDAMAAGKL RGVVCTSSLD LGIDWGDIDL VINVGAPKGA SRLMQRIGRA
NHRIDEASRA VLVPANRFEV LECAAAIDAV AENAQDTLPQ RKGALDVLAQ HILGCACGEP
FFANDLYSEV RSAAPYADLT RADFDDTLDF VATGGYALKS YERFARIKLD KQGRWRVANP
KVRQGYRLNV GTIVEEAMLK VKLVRSSRSS GTGATGAIAR GGRMLGQIEE YFIEGLTPGD
TFVFGGEVVR YEAMMEDQVY VSRAADKDAR VPSYMGGKFP LSTYLAERVR GLLDDRRAWQ
GLPEQVRDWL ALQSKASRVP GRRELVVETF PRAAKYYLVC YPFEGRLAHQ TLGMLLTRRL
ERSRARPLGF VANEYALAVW GLGDMSQMIR QGRLDLDALF DPDMLGDDLE AWLAESALMK
RTFRYAAIIS GLIARRFAGE EKSRRQVLFS TDLVYDVLNK HQPDHVLLRA ARADAATGLL
DLRRLSDMLT RIKGRIVHKE LDRVSPLAVP VMLEIGREAV YGEASDELLA EAAEELVREA
TQRS
|
|---|
| |