| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0784 |
|---|
| Symbol | |
|---|
| ID | 4021258 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 881484 |
|---|
| End bp | 882359 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637960974 |
|---|
| Product | peptidase C14, caspase catalytic subunit p20 |
|---|
| Protein accession | YP_567923 |
|---|
| Protein GI | 91975264 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4249] Uncharacterized protein containing caspase domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTTC GCGCACCCGG CCTGTCGCGC CGTTCGATGA CGACCATCGC CGCTCTGATC
GGCGTCGTGT CGCTGGCGAT TGGCGCCCAT GCCGCGCTGA ACAAGCGCGT CGGCGATGTG
GACCCCGCCA AAGACGCCGC GCGGATCGAA GGCAATGGCC CGACGGCGTC GCGATTCGCT
CTGGTGATCG GCAACGGCCG TTATCCGGAC GCGTCCGAGC CGCTGATCCA GCCGATCAAC
GACGCCCGCG CGCTGAGCGG TGCATTGCGC CGTGAGGGCT TCGACGTCGA CATGATCGAG
GACGCCCGTC GCGACGACAT GCTGCAGGCC GTCGAGCGGA TGAAGGCCCG GGTCACCAAG
GATTCCACCG TTGTGCTGTT CTTCGGCGGC TACGGCATTC AGTCCGGCCG CGAGAGCTAC
ATGATCCCGG TCGACGCCAA CATCTGGAAC GAGGCCGACG TCCGCCGCAC CGGCGTCAGC
ATCGAATCCG TGCTCGGCGA GATGAGGGAG CGCGGCGTGC ACGCCAAGCT CGCGATCATC
GACGCCTCGC GTCGCAATCC CTATGAGCGC CGCTTCCGTT CCTATTCGCA TGGCCTCGCG
CCGATCAACG CGCCCGCCAA TGCGCTGGTG CTGTCGTCAA CGACGCCCGG CAAGGTCGCC
GAGGACGGCG AAGGCCAGAA CAGCGTGCTG GTCGGCGCAT TGCTCGGCTC GATCTCGTCG
CGCCTCGCCA GCGCCGAAGC CGCGTTCACC AAGGCCCGGC TCGCGGTGAC GCGTGCGACC
AACGGCGCGC AGGTGCCGTC GCTGACCTCG TCGCTGGTCG ATGACGTGAA GCTGGCGCCG
GTCACCGCCG ACGCGACGCC CGCCTCCGGC GGCTGA
|
|---|
| Protein sequence | MTFRAPGLSR RSMTTIAALI GVVSLAIGAH AALNKRVGDV DPAKDAARIE GNGPTASRFA
LVIGNGRYPD ASEPLIQPIN DARALSGALR REGFDVDMIE DARRDDMLQA VERMKARVTK
DSTVVLFFGG YGIQSGRESY MIPVDANIWN EADVRRTGVS IESVLGEMRE RGVHAKLAII
DASRRNPYER RFRSYSHGLA PINAPANALV LSSTTPGKVA EDGEGQNSVL VGALLGSISS
RLASAEAAFT KARLAVTRAT NGAQVPSLTS SLVDDVKLAP VTADATPASG G
|
|---|
| |