| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0770 |
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| Symbol | |
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| ID | 4021244 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 862465 |
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| End bp | 864297 |
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| Gene Length | 1833 bp |
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| Protein Length | 610 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637960960 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_567909 |
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| Protein GI | 91975250 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.147569 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAGCG CAGCAAAATC CTATCCAGCA AAGATGACGG CAGAATTGGC GGCTGACAGA
GCCGCTATTG CCGCGCCGCA AGATCGTTTG CCGGAAGATA ATAACGCGAT CGATCTTCAG
CTGCTGGAGG AAATCATCCG CGCCCTCCCC GCAGCGGTGA CGGTGCTGGA TGACCGCGGC
GACTTCCTGA TCGTTAACGA TGCCGCCGCA TCCCGCCTCA ATGTACCGCC ATCCGGCCAT
GCGGCGAGCG TGGTGTCCTT GAATCCGGCG ATCGAACAGC GCCGCGCCGA AGCCGTGGCG
TTGCTCGCAA CCGGCCGTCC GGCGACCAAG GAGGAACGTG CTGGCCACGG TGCAACCGCC
CGCACTTTCC TGACCGCGCA CCGTCCGGTC GAGATCGGCA GCCGCCGATT GCTGCTGTCG
AGCTCGCTCG ACATCACCGA ACAGAAGGCG ATCGAGAACG AGTTGTTCCG CCGCGCTTAC
TTCGACGACC TGACCGGGCT GCCGAACCGG AGCGTGATCG AACGCCGGGC GGACGCGCTG
CTGCAGGCCG GGGGGCCGCC GAACCGTTTC GCGCTGGCAT TCCTCGACGT CGACAATTTC
AAGCACATCA ACGATTACTA CGGCCACGCC GTTGGCGACG CGCTGCTGGT CGGCATCGCC
AAACGGCTCG GGCTCGAGCT GCGCGAGACC GACATGCTGT CGCGCATCAG CGGCGACGAG
TTCCTGCTGC TGCTCAACCC GATCGAGAGC CAAGGCGAAG TCGCCGACTA CATCGACTTT
CTGTTACGGC GACTGAAGGC GCCGTTCTAT ATCGACGGCT CGGAAGTATT CGCCTCGGCG
TCGACCGGCG TCAGCCTGTA TCCTGAACAC GGCCGCAGCT TCGACGCGCT GCGTCAGAAT
GCCGACACAG CGATGTACCG GGTCAAGAGC GCAACCAAGG GCGCCGCGGC GATGTTCGAT
ACCGCCATGG AGCGCGAGGC GCTGGAGCGA ATGTCGATCG AGCAATCGCT GCGCCAGGCG
ATCCTGGACA AGCGGTTCTG CTGTGCGTTC CAGCCGAAGG TCGATATCCG CACCCGCGAG
ATCAAGGGCA TCGAGGCATT GGTGCGGCTA CGCGACGACA ACGGGGTGAT CCAGGCGCCG
GGCACCTTCG TCGAACTGGC CGTCGAGCTC GGGCTGATCG ACGAACTCAC CCATCTGGTG
CTCGCGGAGA TCATGAAGTC GATCGATCTG ATCAACGAAA CCTTCGGCGC CGGCGCCAGC
ATCAGTATCA ACGTCGCGGC CAAGCAGGCC GGCAACTACA ATTTCATGCA GTCTTTCGCA
ACGGCGCTGG CCGCGACCGA GTGCCCGTCG CGCTTCATCG TCGAGGTGAC GGAGGACGCC
TTCGTCGCCA AGAATCACTT CCAGAGCGAG ATCCTGCCGT TGCTGCGCCA AGTCGGCGTC
GGAATTTCGA TCGACGATTT CGGCATCGGC TACTCGTCCT TGTCGGCGCT GGCGGACATC
ACCGCCGACG AAATCAAGAT CGACCGCTCT TTCATCACCG ACATTCACAA GCGCCCGCGC
AGCCAGAGCA TTCTCAAGGC CATCGAATCC CTGAGCGAAG CGCTGGGTAT GACGATGATC
GCCGAAGGAC TGGAGACGTT CGAGGAATTG GCCTATCTGC AGGCAGCGAC CAAGATCCGC
TACGCGCAGG GCTATTACTT CTCGAAGCCG GTCTTCCTCG ACGATCTGAA GCCGTCGGCG
CCGGAGTTCA GCAGTGGCAG GCCGCCCCCC TATGGCCGCC GGATCGAAGC GCCGCGACCG
GTGTTTTCGC GATCGAGCGG CGGTCGCCGT TAG
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| Protein sequence | MSSAAKSYPA KMTAELAADR AAIAAPQDRL PEDNNAIDLQ LLEEIIRALP AAVTVLDDRG
DFLIVNDAAA SRLNVPPSGH AASVVSLNPA IEQRRAEAVA LLATGRPATK EERAGHGATA
RTFLTAHRPV EIGSRRLLLS SSLDITEQKA IENELFRRAY FDDLTGLPNR SVIERRADAL
LQAGGPPNRF ALAFLDVDNF KHINDYYGHA VGDALLVGIA KRLGLELRET DMLSRISGDE
FLLLLNPIES QGEVADYIDF LLRRLKAPFY IDGSEVFASA STGVSLYPEH GRSFDALRQN
ADTAMYRVKS ATKGAAAMFD TAMEREALER MSIEQSLRQA ILDKRFCCAF QPKVDIRTRE
IKGIEALVRL RDDNGVIQAP GTFVELAVEL GLIDELTHLV LAEIMKSIDL INETFGAGAS
ISINVAAKQA GNYNFMQSFA TALAATECPS RFIVEVTEDA FVAKNHFQSE ILPLLRQVGV
GISIDDFGIG YSSLSALADI TADEIKIDRS FITDIHKRPR SQSILKAIES LSEALGMTMI
AEGLETFEEL AYLQAATKIR YAQGYYFSKP VFLDDLKPSA PEFSSGRPPP YGRRIEAPRP
VFSRSSGGRR
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