Gene RPD_0741 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0741 
Symbol 
ID4021214 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp830237 
End bp831925 
Gene Length1689 bp 
Protein Length562 aa 
Translation table11 
GC content64% 
IMG OID637960930 
Productcircadian clock protein KaiC 
Protein accessionYP_567880 
Protein GI91975221 
COG category[T] Signal transduction mechanisms 
COG ID[COG0467] RecA-superfamily ATPases implicated in signal transduction 
TIGRFAM ID[TIGR02655] circadian clock protein KaiC 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGAAG GCATCGCGAA ATCCCTTACC GGCATTGAAG GTTTCGACGA ACTGACGCTC 
GGCGGATTGC CGTCGGGGCG TCCCAGCCTG GTGTGCGGAT CGGCTGGCTG CGGCAAGACC
CTGTTCGCGT CCACCTTCCT CATCAACGGC GCACGGCTGT ATGGCGAGCC GGGCGTGTTC
GTCACCTTCG AGGAGCGTCC GGTCGACATC GTCGACAACG TGCAGTCGCT CGGCTTCGAC
CTCCAGGAGT TGATCGATCA ATCGAGAGTT TTCATCGAGC ACATCGCGCT CGATCCGAGC
GAGATCGCCG AGGTCGGCGA TTACGATCTC GAGGCGCTGT TCCTCCGGCT CGAGTACGCC
GTCGACCAGA TCGGCGCCAA GCGGATCGTG CTCGATACGA TAGAGAGCCT GTTCTCGGCG
TTTTCCAATC CCGCCGTGCT ACGCGCCGAA ATCCGCCGGC TGTTCGACTG GCTGAAGCAG
AAGGGGCTGA CCGCCGTTAT CACCGGCGAA CGCGGCGACG GCACATTGAC CCGCCAGGGG
CTGGAGGAAT ACGTCTCCGA CTGCGTGATT CTGCTCGACC ACCGCGTCGA CCAACAGATT
TCGACGCGGC GGTTGCGTAT CGTCAAATAT CGCGGCACCG CGCACGGCAC CAACGAGTAT
CCGTTCCTGA TCGACGAAGA CGGCTTCAGT GTGCTGCCGG TGTCGTCGCT CGGGCTTACG
CACCAGGTAT TCGAGGAGCG GATCTCGACC GGCGTCAGGG ACCTCGACCG GATGCTGACC
GGCGGCGGCT TCTATCGCGG CAACAGCGTC CTCGTCAGCG GCGTGGCCGG ATCCGGCAAG
AGCTCGCTCT CCTGCATGAT GGCCGACGCA GCCTGCCGCC GTGGCGAGAA GGCGCTGTAT
ATGTCCTTCG AGGAGTCCGA GGCCCAGACC GCGCGGAACA TGAAATCGGT CGGCACCGAT
CTCGGGCCAT GGCTTGCGAG CGGTCAATTG CGCTACATCG CGGCGCGGCC GACCTTCTAC
AGCCTGGAAA TGCATTTAGC CGTGATCCTG CGCGAGGTCA CGCGGTTCAA ACCCGATGTC
GTCGTGCTTG ACCCGATCTC GGCGTTCCTC GGAACCGGCC AGATCGGCGA AGTGCAGGCG
ATGTTGCTGC GGATCGTCGA TTACCTGAAA TCGAACGGCA TCACCGGCGT GTTCACCCAT
CTCGCCCACG GCCAGGAAAC TCAGACCGAC GCCGGGCTGT CGTCGCTGAT GGATGCCTGG
ATCTTGCTGT TGAATCGCGA AGCCCACGGC GAGTTCAATC GCGAGCTTTA TCTGCTGAAG
GCGCGCGGCA TTTCGCATTC AAATCAGGTC CGCGAATTCG TGATGTCCGA CAACGGCATC
CATTTGCTCG AGCCATATCT CGGAGAGGGC GGCGCGTTGA CCGGCTCGGC GCGGCGCAGC
GCGGAGGCGC GGGCGCATCG GGCGGAGATC GAGCGCCAGA CCGAGGTGGC GCGCGTTCAG
GGCGAGATCG CCCAGCGTCG CTCCCGCGCT CTGGCGCAGA TCGAGGCTTT GCAAGCCGAG
ATCGATGCCG ACGAGTCCGA GCTGCGGCGG TTGGCGGAGA TCGAGGACAG ACACGTCAGG
CAGACCGCAA TCGACTCGGA CACATTGGCG CGGAGCAGGG GCATCGATCA CGCTCCGCGC
ACGAAGTAG
 
Protein sequence
MTEGIAKSLT GIEGFDELTL GGLPSGRPSL VCGSAGCGKT LFASTFLING ARLYGEPGVF 
VTFEERPVDI VDNVQSLGFD LQELIDQSRV FIEHIALDPS EIAEVGDYDL EALFLRLEYA
VDQIGAKRIV LDTIESLFSA FSNPAVLRAE IRRLFDWLKQ KGLTAVITGE RGDGTLTRQG
LEEYVSDCVI LLDHRVDQQI STRRLRIVKY RGTAHGTNEY PFLIDEDGFS VLPVSSLGLT
HQVFEERIST GVRDLDRMLT GGGFYRGNSV LVSGVAGSGK SSLSCMMADA ACRRGEKALY
MSFEESEAQT ARNMKSVGTD LGPWLASGQL RYIAARPTFY SLEMHLAVIL REVTRFKPDV
VVLDPISAFL GTGQIGEVQA MLLRIVDYLK SNGITGVFTH LAHGQETQTD AGLSSLMDAW
ILLLNREAHG EFNRELYLLK ARGISHSNQV REFVMSDNGI HLLEPYLGEG GALTGSARRS
AEARAHRAEI ERQTEVARVQ GEIAQRRSRA LAQIEALQAE IDADESELRR LAEIEDRHVR
QTAIDSDTLA RSRGIDHAPR TK