| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0611 |
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| Symbol | |
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| ID | 4021080 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 690637 |
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| End bp | 691926 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637960799 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_567750 |
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| Protein GI | 91975091 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.680985 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAACTC TTATTGTTCT CGGCCTGCTG TTCGCCTTGC TGGCGATCGG CACCCCGGTC
GGCTTCGCAA TGGCGTTCTC CGGCTCGATC GGCCTGCTGA TGGTCGGCGG TCCCGGCACG
CTGTTCGGCA TTCTGGAGAC TGCGCCGTTG TCGACGGTGT CGTCCTATGA ACTGATCACC
ATTCCGATGT TCCTGCTGAT GGCGGAATTG GTGCTGCTCT CGGGCGTCGC CGACGCCCTG
TTCAAGACGG CGTCCGCGTG GGTCGGCCGG ATTCCCGGCG GCCTCGGCAT GGCGACCGCA
CTCGCCGGCG CCGGCTTCGG CGCGATCTGC GGAACCAGCA CCGCCTCCGC GGCGACGCTG
TCGTCGACTA GCCTGCCGGC GATGATCCGG CAGGGCTACG AGCCGAAAAT GGCGGCCGGC
GTGGTGGCGA TTTCCGGCAC GCTGGCGATG CTGATCCCGC CGAGCGTCGC GCTGGTGATT
TTCGGCCTGC TTGCCGAGGT CAATATCGGT CAGTTGCTGA TCGGCGGCAT CATCCCGGCG
GCGCTGGTCA CCGCCACCAT CATGGCCACG ATCTATGTTC TGGTCTGGCT GGACCCGTCG
CGGGCGCCGC GCGTCGAGGC GGTGCCGTGG CGTGAGCGGT TCACGCTGCT GTGGCAGATC
GGCCCGATGG TCGCGCTGTT CACGCTCGTG ACTGGCACGA TCTATCTCGG CGTTGCGACT
CCGACCGAAG CCTCGGCGCT CGGCGCCGCC GGCGCGCTGG TGCTCGCGAT ATCGAAGCGC
AAGGTCACGG TCGCTTCGCT GTACAAGGCG CTGCTCAGCG CGAGCTACGG CACCTGCATG
ATCGTCACGA TTCTGGTCGG CGCCTCGGTC TTCGGTTACT TCTTCACGCT CACCCATGTC
ACCCAGGACC TGGTGGCCTG GGTCGGATCG CTGGAAACGT CGCGCTGGGT GATCATCACG
CTGATCCTGT GCGGCTATAT CGTGCTCGGC TCGTTCATGG ACCAGATCGC GATCCTGGTT
CTGACGGTGC CGATCGTGCT GCCGCTGATC AAGACGCTGG GCTTCGATCC GATCTGGTTC
GGCGTGATCA AGATCGTCAC CGCGGAGGTC GGCATGATCA CGCCGCCGGT CGGGCTGAAC
TGCTTCATCG TCGCGCGCTA CGCCAAACGG CCGGTCTCCG AGGTGTTCCA CGGAACGTTC
CCGCACTTCA TCGCGCATCT GATCGCGATC GCGATCATGG TCGCATTCCC GAGCATCATC
CTGTGGCTGC CATCGCAGAT GGCGAACTGA
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| Protein sequence | MTTLIVLGLL FALLAIGTPV GFAMAFSGSI GLLMVGGPGT LFGILETAPL STVSSYELIT
IPMFLLMAEL VLLSGVADAL FKTASAWVGR IPGGLGMATA LAGAGFGAIC GTSTASAATL
SSTSLPAMIR QGYEPKMAAG VVAISGTLAM LIPPSVALVI FGLLAEVNIG QLLIGGIIPA
ALVTATIMAT IYVLVWLDPS RAPRVEAVPW RERFTLLWQI GPMVALFTLV TGTIYLGVAT
PTEASALGAA GALVLAISKR KVTVASLYKA LLSASYGTCM IVTILVGASV FGYFFTLTHV
TQDLVAWVGS LETSRWVIIT LILCGYIVLG SFMDQIAILV LTVPIVLPLI KTLGFDPIWF
GVIKIVTAEV GMITPPVGLN CFIVARYAKR PVSEVFHGTF PHFIAHLIAI AIMVAFPSII
LWLPSQMAN
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