Gene RPD_0550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0550 
Symbol 
ID4021018 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp621944 
End bp623347 
Gene Length1404 bp 
Protein Length467 aa 
Translation table11 
GC content66% 
IMG OID637960737 
Productdihydrolipoamide dehydrogenase 
Protein accessionYP_567689 
Protein GI91975030 
COG category[C] Energy production and conversion 
COG ID[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 
TIGRFAM ID[TIGR01350] dihydrolipoamide dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00865571 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.262982 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCACCT ACGATCTCGT CATCATCGGC ACCGGCCCCG GCGGCTATGT CTGCGCGATC 
CGCGCGGCGC AGCTTGGTCT CAAGGTCGCA GTGGTGGAAA AGAACGCCAC GCTCGGCGGC
ACCTGCCTGA ATGTCGGCTG CATGCCGTCG AAGGCGCTGC TGCACGCCTC GGAGCTGTTC
GAGGAGGCCG GGCACTCGTT CGCCAAGATG GGAATCGGCG TGCCGGCGCC GACGCTCGAT
CTGCCGGCGA TGATGAACTT CAAGCAGCAG GGCATCGACG GCAACGTCAA GGGCGTCGAA
TACCTGATGA AGAAGAACAA GATCGACGTG CTGGTCGGCC GCGGCAGGGT GCTGGGCGCC
GGCAAGGTCG AGGTCACCGG CAATGACGGC AAGGCCCAGA CGGTCGAGAC CAAGTCGATC
GTGATCGCCA CTGGCTCGGA CGTGGCCAAG CTCAAGGGCA TCGCGATCGA CGAGAAGCGC
GTGGTGTCGT CGACCGGCGC GCTGTCGCTC GACAAGGTAC CGGAAAGACT GATCGTGGTC
GGCGCCGGCG TGATCGGGCT CGAGCTCGGC TCGGTGTGGC GGCGGCTTGG CGCGCAGGTC
ACCGTCGTCG AATTCCTCGA CCGTATCCTG CCCGGCATGG ATTCCGAGAT CGTCAAGCAG
TTCCAGCGCA TCCTCGAGAA GCAGGGTTTT GCCTTCAAGC TCGGCGCCAA GGTCACCGGC
GTCGATAGTT CGGGCGCAAA GCTTGCGGTG AAGGTCGAGG CGGCGGCCGG CGGCAATCCG
GAGACGCTCG AAGCCGACGT CGTGCTGGTC GCGATCGGCC GGGTGCCCTA CACCGAAGGC
CTCGGGCTGA AAGAGGCCGG CGTCGCGCTC GACGAGCGCG GCCGCGTCGT GATCGACAAT
CACTTCGCCA CCAGCGTCAA GGGCGTCTAC GCGATCGGCG ACGTCGTCAG AGGTCCGATG
CTGGCGCACA AGGCCGAGGA CGAGGGCGTC GCGGTCGCCG AGCTGCTCGC CGGCAAGGCC
GGGCATGTGA ACTACGACGT CATTCCGGGC GTGGTCTACA CCACGCCGGA GGTGTCGTCG
GTCGGCAAGA CCGAGGAAGA CCTCAAGCAG GCCGGAATCG CCTACACGGT CGGCAAATTC
CCGTTCACCG CGAATGGCCG CTCCAAGGTC AACCAGACCA CCGACGGTCT GGTGAAGATC
CTCGCCGACG CCAAGACCGA CCGCGTGCTC GGCGTGCACA TTGTCGGCCG CGAAGCCGGC
GAGTTGATCC ACGAGGCCGC GGTGCTGATG GAGTTCGGCG GCTCGGCCGA AGATCTCGCG
CGCACCTGCC ACGCTCACCC GACCCGCTCG GAAGCCGTCA AGGAAGCCGC GCTTGCGGTG
GGAAAACGCG CCATCCATAT GTGA
 
Protein sequence
MATYDLVIIG TGPGGYVCAI RAAQLGLKVA VVEKNATLGG TCLNVGCMPS KALLHASELF 
EEAGHSFAKM GIGVPAPTLD LPAMMNFKQQ GIDGNVKGVE YLMKKNKIDV LVGRGRVLGA
GKVEVTGNDG KAQTVETKSI VIATGSDVAK LKGIAIDEKR VVSSTGALSL DKVPERLIVV
GAGVIGLELG SVWRRLGAQV TVVEFLDRIL PGMDSEIVKQ FQRILEKQGF AFKLGAKVTG
VDSSGAKLAV KVEAAAGGNP ETLEADVVLV AIGRVPYTEG LGLKEAGVAL DERGRVVIDN
HFATSVKGVY AIGDVVRGPM LAHKAEDEGV AVAELLAGKA GHVNYDVIPG VVYTTPEVSS
VGKTEEDLKQ AGIAYTVGKF PFTANGRSKV NQTTDGLVKI LADAKTDRVL GVHIVGREAG
ELIHEAAVLM EFGGSAEDLA RTCHAHPTRS EAVKEAALAV GKRAIHM