| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0547 |
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| Symbol | |
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| ID | 4021015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 620619 |
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| End bp | 621365 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637960734 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_567686 |
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| Protein GI | 91975027 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00539118 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.224466 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGATC GCGTCGTCGT CATCACCGGC GGCAGCCGCG GCATCGGCCG CGCCACCGCG
CTCGCCGCCG CCGCCCGCGG CTTCAAGGTC GTGGTCGGCT ACGCCAGCAA CGAAGAGGCG
GCGCGCACCG TCGTTTCGGA GATCGAAGCC CGCAACGGCA AGGCGATCGC GGTGAAATGC
GACGTCGGCA GCGAGCCCGA TATCCTGGCG CTGTTCGCAG CCGCTGATCA ATTCGGAACG
CTCGGCGCGT TGGTCAACAA TGCCGGCATC GTCGGGCCGA CGACGCGGGT CGACGAGATG
TCGGCCGAGC GAATCCAGCG GATGATGGCG GTCAACGTCA CCGGAAGCAT CCTGTGCGCG
CGCGAGGCGG TGAAGCGGCT GTCGACCCGC CATGGTGGGC CGGGCGGCGT GATCGTCAAC
CTGTCCTCGG TCGCCGCCAA GCTCGGCTCG CCGAATACTT ATGTCGACTA CGCCGCCTCC
AAGGGCGCGA TCGATTCCTT CACGGTCGGT CTCGGCCATG AGGTCGCGGG CGAAGGCATC
CGCGTCGCCG CGATCCGGCC CGGCCTGATC GACACCGACA TCCATGCCTC GGGCGGCGAT
CCCGACCGCG CACACCGGCT CAGCGCCAAC GTGCCGATGC AGCGCGTCGG CCGCGCCGAG
GAAATCGCCA ATGCCATCGT CTGGCTGATG TCCGACGAGG CCTCCTACGT CACCAGCGCG
ATCCTCGATG TTTCGGGCGG ACGGTAG
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| Protein sequence | MNDRVVVITG GSRGIGRATA LAAAARGFKV VVGYASNEEA ARTVVSEIEA RNGKAIAVKC
DVGSEPDILA LFAAADQFGT LGALVNNAGI VGPTTRVDEM SAERIQRMMA VNVTGSILCA
REAVKRLSTR HGGPGGVIVN LSSVAAKLGS PNTYVDYAAS KGAIDSFTVG LGHEVAGEGI
RVAAIRPGLI DTDIHASGGD PDRAHRLSAN VPMQRVGRAE EIANAIVWLM SDEASYVTSA
ILDVSGGR
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