| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0525 |
|---|
| Symbol | |
|---|
| ID | 4020993 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 594905 |
|---|
| End bp | 597622 |
|---|
| Gene Length | 2718 bp |
|---|
| Protein Length | 905 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637960712 |
|---|
| Product | aconitate hydratase |
|---|
| Protein accession | YP_567664 |
|---|
| Protein GI | 91975005 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1048] Aconitase A |
|---|
| TIGRFAM ID | [TIGR01341] aconitate hydratase 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.123163 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCGC TCGACAGCTT CAAATGCCGG AAGATCCTCA AGGTCGGCAG CAAGTCTTAC
GTCTATTACA GCCTGCCGAC CGCCGAGAAG AACGGCCTGA AGGGCATCTC CCGGCTGCCC
TATTCGATGA AGGTGCTGCT GGAGAATCTG CTGCGCAACG AGGACGACCG CACCGTCAAG
AAAGCGGACA TCCAGGCTGT GGCCAAATGG ATGCGCAAGA AGGCGCTGGA ACACGAGATC
GCGTTCCGCC CGGCGCGCGT GCTGATGCAG GACTTCACCG GCGTGCCCGC GGTGGTCGAT
CTGGCGGCCA TGCGCAACGC GATGCAGGCG CTCGGCGGCG ACGCGGAAAA GATCAACCCG
CTGGTGCCGG TCGATCTCGT CATCGACCAC TCGGTGATCG TCAACTTCTT CGGTGACAAC
AAGGCGTTCG GCAAGAACGT CGCCGAGGAG TACAAGCAGA ACCAGGAACG CTACGAATTC
CTGAAGTGGG GCCAGAAGGC GTTCTCGAAC TTCGCGGTGG TGCCGCCCGG CACCGGCATC
TGCCATCAGG TCAATCTCGA ATATCTGGCG CAGACGGTCT GGACCCGTAA GGAGAAAATG
ACCATCGGCA AGAAGAAGGG CACCTTCGAG GTGGCCTATC CGGATTCGCT GGTCGGCACA
GATTCGCATA CCACCATGGT CAACGGCCTC GCCGTGCTCG GCTGGGGCGT CGGCGGCATC
GAGGCGGAAG CCGCGATGCT CGGCCAGCCG CTGTCGATGC TGCTGCCCGA AGTGGTCGGC
TTCAAGCTCA AGGGCGCGCT CAAGGAAGGC GTCACCGCCA CCGATCTGGT GCTGACCGTG
ACGCAGATGC TGCGCAAACA GGGCGTGGTC GGCAAGTTCG TCGAGTTCTT CGGCCCGGGC
CTCGATCATC TCTCGGTCGC CGACAAATCG ACCATCGCCA ACATGGCGCC GGAATACGGC
GCGACCTGCG GCTTCTTCCC GGTCGACACC GAAACCCTCG ACTATCTGAA GACCTCGGGC
CGGGCCTCGG CGCGGGTTGC GCTGGTCGAG AAATACGCCA AGGCGCAGGG CCTGTTCCGC
ACCGCCAAAT CGGCCGACCC GGTGTTCACC GTCACCCTGA CGCTCGATCT CGCCAGCGTG
GTGCCGTCGC TGGCCGGGCC GAAGCGCCCC GAAGGCCGCG TCGCGCTGCC GGCGGTTTCG
GAAGGCTTCA CCGCGGCGAT GGACGCCGAA TACAAGAAGG CGCTGGACGG CGCGCGCTAC
GCGGTCGACG GCCGGAAATT CGATCTCGGC CATGGCGACG TGGTGATCGC CGCGATCACC
TCCTGCACCA ACACCTCGAA TCCGAGCGTG CTGATCGGCG CCGGCCTGCT CGCCCGCAAC
GCCGCGGCGA AGGGCCTGAA AGCCGCGCCG TGGGTGAAGA CCTCGCTGGC GCCGGGCTCG
CAGGTGGTGG CGGAGTATCT CGCCAATTCC GGCCTGCAGA AGGACCTCGA CAAGGTCGGC
TTCAACCTGG TCGGCTTCGG CTGCACCACC TGCATCGGCA ATTCCGGCCC GCTGCCGGAG
GACATCTCGA AGTCGATCAA CGACAACGGC ATCGTCGCCG CCGCCGTGCT GTCGGGCAAC
CGCAACTTCG AGGGCCGCGT CTCGCCGGAC GTGCAGGCGA ACTACCTCGC CTCGCCGCCG
CTGGTGGTCG CCTATGCGCT CGCCGGCACC GTGACCAAGA ATCTCGCGGT CGAGCCGATC
GGCACCGGCA AGGACGGCAA GCCGGTGTAC CTCAAGGACA TCTGGCCGAC CACCAAGGAG
ATCAACGCCT TCGTCAAGAA GTACGTCACC GCGGCGATCT TCAAGAAGAA GTACGCCGAC
GTATTCAAGG GCGACACCAA CTGGCGCAAG ATCAAGACCG TCGACTCCGA GACCTACAAG
TGGAACATGA GTTCCACCTA TGTGCAGAAT CCGCCTTACT TCGAAGGCAT GAAGATGCAG
CCGGAGCCGA TCGTCGACGT CGTCGACGCC CGCATCCTGG CGGTGTTCGG CGACAAAATC
ACCACCGACC ACATCTCGCC GGCGGGTTCG ATCAAGCTGA CGTCGCCGGC CGGCAAGTAT
CTGTCGGAGC ATCAGGTGCG TCCGGCCGAC TTCAATCAGT ACGGCACCCG CCGCGGCAAT
CATGAAGTCA TGATGCGCGG CACCTTTGCC AACATCCGCA TCAAGAACCA CATGCTGAAG
GGCGCCGACG GCAATATTCC GGAAGGCGGA CTGACCAAGC ATTGGCCCGA CGGCGACCAG
ATGTCGATCT ACGACGCCGC GATGAAGTAT CAGGCCGAGC AGGTGCCGCT GGTGGTGTTC
GCCGGCGCCG AATACGGCAA CGGCTCGTCG CGCGACTGGG CGGCGAAGGG CACCCGGCTG
CTCGGCGTCC GCGCGGTGAT CTGCCAGAGC TTCGAGCGCA TCCATCGCTC GAATCTGGTC
GGCATGGGCG TGCTGCCGCT GACCTTCGAA GACGGAACGT CGTGGGCCTC GCTCGGCATC
AAGGGTGACG AGAAGGTGAC GATCCGCGGG CTGCAGGGCG ATCTCAAGCC GCGACAGACG
CTGACGGCGG AGATCAAAGC CGGCAACGGC AAGGTCAAGC GGGTGCCGCT GCTGTGCCGC
ATCGATACGC TCGACGAACT CGAATACTAT CGCAACGGCG GCATCCTGCA CTACGTTCTC
AGGAAACTCG CGGCCTAG
|
|---|
| Protein sequence | MTSLDSFKCR KILKVGSKSY VYYSLPTAEK NGLKGISRLP YSMKVLLENL LRNEDDRTVK
KADIQAVAKW MRKKALEHEI AFRPARVLMQ DFTGVPAVVD LAAMRNAMQA LGGDAEKINP
LVPVDLVIDH SVIVNFFGDN KAFGKNVAEE YKQNQERYEF LKWGQKAFSN FAVVPPGTGI
CHQVNLEYLA QTVWTRKEKM TIGKKKGTFE VAYPDSLVGT DSHTTMVNGL AVLGWGVGGI
EAEAAMLGQP LSMLLPEVVG FKLKGALKEG VTATDLVLTV TQMLRKQGVV GKFVEFFGPG
LDHLSVADKS TIANMAPEYG ATCGFFPVDT ETLDYLKTSG RASARVALVE KYAKAQGLFR
TAKSADPVFT VTLTLDLASV VPSLAGPKRP EGRVALPAVS EGFTAAMDAE YKKALDGARY
AVDGRKFDLG HGDVVIAAIT SCTNTSNPSV LIGAGLLARN AAAKGLKAAP WVKTSLAPGS
QVVAEYLANS GLQKDLDKVG FNLVGFGCTT CIGNSGPLPE DISKSINDNG IVAAAVLSGN
RNFEGRVSPD VQANYLASPP LVVAYALAGT VTKNLAVEPI GTGKDGKPVY LKDIWPTTKE
INAFVKKYVT AAIFKKKYAD VFKGDTNWRK IKTVDSETYK WNMSSTYVQN PPYFEGMKMQ
PEPIVDVVDA RILAVFGDKI TTDHISPAGS IKLTSPAGKY LSEHQVRPAD FNQYGTRRGN
HEVMMRGTFA NIRIKNHMLK GADGNIPEGG LTKHWPDGDQ MSIYDAAMKY QAEQVPLVVF
AGAEYGNGSS RDWAAKGTRL LGVRAVICQS FERIHRSNLV GMGVLPLTFE DGTSWASLGI
KGDEKVTIRG LQGDLKPRQT LTAEIKAGNG KVKRVPLLCR IDTLDELEYY RNGGILHYVL
RKLAA
|
|---|
| |