Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_0478 |
Symbol | sdhB |
ID | 4020946 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 552188 |
End bp | 552970 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637960665 |
Product | succinate dehydrogenase iron-sulfur subunit |
Protein accession | YP_567617 |
Protein GI | 91974958 |
COG category | [C] Energy production and conversion |
COG ID | [COG0479] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit |
TIGRFAM ID | [TIGR00384] succinate dehydrogenase and fumarate reductase iron-sulfur protein |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.617159 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.371363 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTGAAT TCGCACTTCC GAAGAATTCG AAGATTGTCG GCGGCAAAGC CTGGCCGAAG CCGGAAGGCG CGACCGAAGT GCGCGAATTC CGCGTCTATC GCTGGAATCC CGACGACGGC AACAACCCGA GCATCGACAC CTATTACGTC GACAAGCACG ATTGCGGCCC GATGGTTCTC GACGGCCTGA TCTGGATCAA GAACAACATC GATCCGACGC TAACCTTCCG CCGCTCCTGC CGCGAAGGCG TCTGCGGCTC CTGCGCGATG AACATCGACG GCGAGAACAC GCTGGCCTGC ACCAAGGCGA TGGACGACGT CCGCGGCGAC GCGGTCAAGG TTACGCCGCT GCCGCACCAG CCGGTGGTGA AGGATCTGGT GCCCGACCTC ACCAATTTCT ACGCGCAATA CGCCTCGATC CAGCCCTGGC TGCAGACCGT GACGCCGACG CCGCAGAAGG AATGGCGGCA GAGCCACGAC GACCGCGAGA AGCTCGACGG CCTGTACGAA TGCATCCTGT GCGCCTGCTG CTCGACCTCG TGCCCCAGCT ATTGGTGGAA TTCCGACCGC TTCCTGGGAC CGGCGGCGCT GCTACAGGCG ACCCGCTGGG TCGAGGACAG CCGCGACGAG GCCACCGGCG AACGGCTCGA CAATCTCGAG GATCCGTTCC GGATCTATCG CTGCCACACC ATCATGAACT GCGCCAAGGC GTGCCCGAAG GGCCTCAACC CGTCGGAAGC GATCGCCAGT CTCAAGCTCA AGCTGGTCGA ACGCCAGATC TGA
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Protein sequence | MVEFALPKNS KIVGGKAWPK PEGATEVREF RVYRWNPDDG NNPSIDTYYV DKHDCGPMVL DGLIWIKNNI DPTLTFRRSC REGVCGSCAM NIDGENTLAC TKAMDDVRGD AVKVTPLPHQ PVVKDLVPDL TNFYAQYASI QPWLQTVTPT PQKEWRQSHD DREKLDGLYE CILCACCSTS CPSYWWNSDR FLGPAALLQA TRWVEDSRDE ATGERLDNLE DPFRIYRCHT IMNCAKACPK GLNPSEAIAS LKLKLVERQI
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