| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0470 |
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| Symbol | |
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| ID | 4020938 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 542016 |
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| End bp | 543185 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637960657 |
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| Product | putative DNA-binding/iron metalloprotein/AP endonuclease |
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| Protein accession | YP_567609 |
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| Protein GI | 91974950 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0533] Metal-dependent proteases with possible chaperone activity |
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| TIGRFAM ID | [TIGR00329] metallohydrolase, glycoprotease/Kae1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.153158 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGCAT TCCGCGACCC CGCAATGCTA CGCGAAGCAA GGAGAACGCT GGTTCGGCCG
CAAACGCAAG GGCTCAATTT GACTAGTGAA CAAACCTTGC TGGTGCTCGG AATCGAGACA
ACCTGCGATG AAACCGCCGC CGCCGTGGTC GAGCGCCGCG CCGACGGCAG CGGCCGGATT
CTCTCCAACA TCGTGCGCTC GCAAATCGAC GAACACGCGC CGTTCGGTGG CGTTGTACCG
GAGATCGCCG CGCGGGCGCA TGTCGATCTG CTCGACGGCA TCGTCGCAAA TGCCATGCGG
GAAGCGGGAA CCGGTTTTGC GCAGCTGTCG GGCGTCGCGG CGGCGGCAGG GCCGGGGCTG
ATCGGCGGCG TCATCGTCGG GCTGACCACC GCGAAGGCGA TCGCGCTGGT GCACAACACG
CCGTTGATCG CGGTCAATCA CCTCGAGGCG CACGCGCTGA CGCCGCGGCT GACGGATGCG
ACCGAGTTTC CTTACTGCCT GTTCCTCGCC TCCGGCGGCC ACACCCAGAT TGTCGCCGTG
CTCGGCGTCG GCGACTACGT CCGGCTCGGC ACCACGGTGG ACGATGCGAT CGGCGAGGCG
TTCGACAAGA TCGCCAAGAT GCTGGGGCTG CCTTATCCGG GCGGGCCGCA GGTCGAGCGC
GCAGCGGCGT CCGGCGACGC CGCGCGGTTC GCGTTCCCGC GGCCGATGCT GGGGCGGCCC
GACGCCAATT TCTCGCTGTC CGGCCTCAAG ACCGCGGTGC GCAACGAGGC CAGCCGGCTG
ACGCCGCTGG AGCCGCAGGA CATCAACGAT CTGTGCGCCG GCTTCCAGGC CGCGGTGCTG
GACTCGATGG CCGACCGGCT GGGCGCCGGG CTGCGGTTGT TCCGCGAGCG CTTCGGTGCG
CCGAAGGCGC TGGTCGCGGC CGGCGGGGTC GCCGCAAATC AGGCGATCCG CCGGTCTTTG
CGGGAGGTCG CCGCGAAGGC GCAGACCACG CTGATGGTGC CGCCGCCGGC GCTGTGCACC
GACAACGGCG CGATGATCGC CTGGGCCGGC GCCGAGCGTC TCGCGCTCGG CCTGACCGAC
ACCATGGACG CGGCGCCCCG CGCCCGCTGG CTGCTCGATG CCAACGCGAC CGCGCCGGGA
AAATTCGCCA ATACGCGCGC GGGATTCTGA
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| Protein sequence | MIAFRDPAML REARRTLVRP QTQGLNLTSE QTLLVLGIET TCDETAAAVV ERRADGSGRI
LSNIVRSQID EHAPFGGVVP EIAARAHVDL LDGIVANAMR EAGTGFAQLS GVAAAAGPGL
IGGVIVGLTT AKAIALVHNT PLIAVNHLEA HALTPRLTDA TEFPYCLFLA SGGHTQIVAV
LGVGDYVRLG TTVDDAIGEA FDKIAKMLGL PYPGGPQVER AAASGDAARF AFPRPMLGRP
DANFSLSGLK TAVRNEASRL TPLEPQDIND LCAGFQAAVL DSMADRLGAG LRLFRERFGA
PKALVAAGGV AANQAIRRSL REVAAKAQTT LMVPPPALCT DNGAMIAWAG AERLALGLTD
TMDAAPRARW LLDANATAPG KFANTRAGF
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