| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0453 |
|---|
| Symbol | |
|---|
| ID | 4020919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 520635 |
|---|
| End bp | 521954 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637960638 |
|---|
| Product | 2-octaprenyl-6-methoxyphenyl hydroxylase |
|---|
| Protein accession | YP_567592 |
|---|
| Protein GI | 91974933 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0654] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01988] Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00796447 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.115301 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGGTA GAACCGCAGC GGTAATCACC ACGGCTGTTC CAGCCTGTTT CGCCCAGCTC
CGGCATGGGC GCAAGAACTC TGGCGCAAGA GCGAGAAAAA TGACGGCACC GCGAAGCATT
GTCATCGGAG GCGGCGCATT CGCCGGGCTG GCGCTGGCGC TGGCGCTGCG CCAGGGGCTC
GGCCCCGAGG TCCCGGTGAT CGTCGCCGAT CCGGCGCTGG CGCTGCGGCC GTCGCGCGAT
CCGCGCGCCA CCGCGATCGT CGCCGCCTGC CGGCGGCTGT TCGAGGCGCT CGGCGTCTGG
GACGAGGTCG CGCCGACGGC GCAGCCGATC ATCGACATGG TGGTGACGGA TTCGGCGCTC
GAGGACGCGA CGCGGCCGGT GTTCCTGACC TTCGCCGGCG AGGTGCAGCC CGGCGAGCCG
TTCGCCCATA TGGTCGAGAA CAAATATCTG ATCGAGGCGT TGGCCAAGCG CGCCGAGGCC
GAGGGCGTCG AATTGCGCGC CACGCCGGTG ACTTCATACC AGTCGCGCGC CGAGGCCACG
ATGGTGACGC TCGGCGACGG CAGCGTGATC GAGGCGAGCC TGCTGGTCGC CGCCGACGGC
GCCAAGTCGA AGCTGCGCGA ACGCGCCGGC ATCAGCACCT ATGGCTGGGA CTACGACCAG
ACCGGCATCG TTGTCACCGT CGCGCACGAG CGCGACCACA ATGGCTGCGC CGAGGAGCAC
TTCCTGCCGG CGGGGCCGTT CGCGATCCTG CCGCTGACCG GCAAACGCTC CTCGCTGGTG
TGGTCCGAGA GCCGCGCCGA CGCTGCGAAG ATCATGGCGC TGCCCGACGC GCAGTTCCAG
GCCGAGCTGG AGAAGCGGTT CGGACTGCGG CTCGGCGAGG TCAAGCCGCT CGACAAGCCG
AAGGCGTTTC CGCTCGGTTA CTTCGTCGCG CAATCCTTCA TCGCGCCGCG TCTGGCGCTG
ATCGGCGACG CCGCCCATGT GATCCACCCG ATCGCCGGCC AGGGCCTCAA TATGGGTTTG
AAGGACGTCG CGGCGCTGGC CGAAGTGGTG GTCGATGCGG CGCGGCTCGG GATCGATCCC
GGCCAGGTCG ACGTGCTGGA GCGCTACCAG CGCTGGCGGC GGTTCGACAC CATGGCGATG
GGCGTCGCCA CCAACGGGCT GAACCTGCTG TTCTCCAACA AGTCGCCGCT GCTGCGCAGC
GTCCGCGACA TCGGGCTCGG CATCGTGGAC CGTCTGCCGC CGCTGAAAGA GGTCTTCATC
CGCCAGGCCG CCGGTCTCGG CGGCGAAACC CCGCGGCTGC TGAAGGGCGA GGCGCTGTAG
|
|---|
| Protein sequence | MSGRTAAVIT TAVPACFAQL RHGRKNSGAR ARKMTAPRSI VIGGGAFAGL ALALALRQGL
GPEVPVIVAD PALALRPSRD PRATAIVAAC RRLFEALGVW DEVAPTAQPI IDMVVTDSAL
EDATRPVFLT FAGEVQPGEP FAHMVENKYL IEALAKRAEA EGVELRATPV TSYQSRAEAT
MVTLGDGSVI EASLLVAADG AKSKLRERAG ISTYGWDYDQ TGIVVTVAHE RDHNGCAEEH
FLPAGPFAIL PLTGKRSSLV WSESRADAAK IMALPDAQFQ AELEKRFGLR LGEVKPLDKP
KAFPLGYFVA QSFIAPRLAL IGDAAHVIHP IAGQGLNMGL KDVAALAEVV VDAARLGIDP
GQVDVLERYQ RWRRFDTMAM GVATNGLNLL FSNKSPLLRS VRDIGLGIVD RLPPLKEVFI
RQAAGLGGET PRLLKGEAL
|
|---|
| |