Gene RPD_0440 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0440 
Symbol 
ID4020906 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp507883 
End bp508569 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content64% 
IMG OID637960625 
Productwinged helix family two component transcriptional regulator 
Protein accessionYP_567579 
Protein GI91974920 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.79352 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGAACG CCCGCAAGAT CCTGATCGTG GATGACGACA CTGATCTGCG CGAAGCGTTG 
GTCGAGCAAT TGTCGCTGCA CGAGGAATTC GAGGCTTCCG CGGTCGACAC CGGCGCCAAG
GGCGTGCAGT CGGCCAAGGC GAACTCGCCG GATCTGGTGC TGATGGATGT CGGGCTGCCC
GACACCGACG GCCGCGAAGT GGTGCGCAGC TTGCGCAAGG GCGGCTTCAA GGCGCCGATC
ATCATGCTGA CCGGGCACGA TACCGATTCC GATACCATTC TCGGGCTGGA GAGCGGCGCC
AACGACTATG TCGCCAAGCC GTTCCGCTTC GCGGTGCTGC TGGCGCGAAT TCGCGCCCAG
CTCCGCCAGC ACGAAGCCAG CGAGGACGCG GTGTTCACCG TCGGCCCCTA CAGCTTCCGC
CCCGGCTCCA AGATGCTGAC CGGCGCCAAC GCCAAGAAGG TGCGGCTGAC CGAAAAGGAG
ACCGCGATCC TGCGCTTCCT GTACCGCGCC AGCCAATCGC CGGTGTCGCG CGAGACGCTG
CTGCAGGAAG TCTGGGGCTA TAATTCGGGT GTGACGACCC ACACGCTCGA GACCCATATT
TACCGACTTC GCCAAAAGAT CGAGAAGGAT GCGGCGAATC CGGAGATTCT GGTCACCGAG
GCCGGTGGCT ACAAACTCGT GCCGTGA
 
Protein sequence
MPNARKILIV DDDTDLREAL VEQLSLHEEF EASAVDTGAK GVQSAKANSP DLVLMDVGLP 
DTDGREVVRS LRKGGFKAPI IMLTGHDTDS DTILGLESGA NDYVAKPFRF AVLLARIRAQ
LRQHEASEDA VFTVGPYSFR PGSKMLTGAN AKKVRLTEKE TAILRFLYRA SQSPVSRETL
LQEVWGYNSG VTTHTLETHI YRLRQKIEKD AANPEILVTE AGGYKLVP