| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0437 |
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| Symbol | |
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| ID | 4020903 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 504585 |
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| End bp | 506261 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637960622 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_567576 |
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| Protein GI | 91974917 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACGCA TCGCCATCAT TCGCAAGAAA TCGCAGCTCC GGGGGATGCT CGGAATCCGC
GCCAGGCTGG TGGTTCTGGC TCTGATTCTG GTCTGCCCGC TGATGCTCGA TCGCGTGCGT
CTGCTCGAAA ACACGCGCAC CACCCAGATT GCCGCGGTGG CCGACAGTGT CGCAACGCTG
GCGCAGCGCG CCACCGATGC ACAGCGCGAA GTGATCTCCT CGGTCGAGGC GGTGCTGAAA
TCGGCGGCCT ATATCCACGC CGCGGCGTCG CAGATCGGGC GCAGCTGCAG CATCCTGCGC
GCCAGCCTGC GGGTCGATCT GCCCTCGATC CGGATGCTGT CGGTGGCGGA TTCCAGCGGC
ATCATCCGCT GCTCCACCTC GTCGATGTTC GTCGGCTCGG ACGTCAGCAA CCGCGCTTAT
TTCCGCAAGG CGTTCGAGAC CCACGATTTC GTCGTCAGCG ACTTCGTGAT CGGACAACAG
AGCCGCCAGG GCACGATCCT CGCGGCCTAT CCGGTGTCGG CGGTCGACAC CGGCGAAGAA
GCCGTGCTGA TCGCCGGCAT GAATCTCGAT TGGCTGTCGG ACATCATGGC CAATCTCGCC
GGCCGCCCCG GGATCAACGT CGCGCTGATC GACGGCGAAG GCACCGTGCT GGCGACGCCG
CCCGACCACC GCAGCCTGAT CGGCCGCAAA CTCGATCAGT CGACGCTGGA TTTCGCGCTC
GGCGCCCGCC CTCTGGAGCG CGAACAGGCG ACCACCTCCA TTGATTCCGG GCAGACGCTG
TCGGTGTCGC GGATACCCGG CACCAATGCG CGGCTGGTGG TGACGCTGGA CGAGAACATC
GTCTCGGCGG CGATCAGCCG CGACATCCGC ACCGCCTATC TGCAATTGGC GCTGGTCTGC
CTGCTCGTGC TGCTCGGCGC GCTGATCGCC GCCGAACGGC TGATCGTGCG GCCGATCTCG
GTCCTGACCT CGATCGCCAA CCAGTTCGCG CAGGGCGACT GGTCGGCGCG CGTCACAAGG
GCACGGCTGC CGGCGGAATT TCTGCCCTTG GCGCGCGCGT TCAACGCGAT GGCCGCGCAG
CTCGGCCAAC GCGAGCGCGA ACTGGTCGCA AGCAACAACA GCCTGACCGT GATGGCGTCG
ATGGATCTGC TGAGCGGGCT CGCCAACCGG CGCGGCTTCC AGAGCCGGCT GGATTTCGAA
TGGATGCGCG GCCTGCAGAA CGGTCATACC GTGGCGCTGC TGCTGCTCGA CGTCGATTAT
TTCAAGTCGT TCAACGATAG CTACGGCCAC CCGGAGGGCG ACGCCTGCCT GTCCCGGATC
GGCGAGACCC TCGCCACCGT CGCCAACGAC ACCGGCGGCT TTGCGGCGCG CTATGGCGGC
GAGGAGTTCT GCCTTCTGTT GCCGGATACC GACGCCGACA CCGCCTATCA GGTCGGCGAA
ATGGTCCGCG CCACCGTCGA ACGGCTGGAC GTGCCCCACC ACACCAGCTT GTTTCAGCGC
GTCACCGTCA GCATCGGCGT CGCGTCCACT TCGCCGACCG AGGACGCCAG CCCGGCCGAG
TTGATCGAGG CCGCCGACGC CGCGCTCTAT GCCGCCAAGG GCCGCGGCCG CAACACCGTC
GTCGAACACG GCTTCATCCG CGCCACCGAC ACGATATCGA TGGCGATCGC CAGCTGA
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| Protein sequence | MSRIAIIRKK SQLRGMLGIR ARLVVLALIL VCPLMLDRVR LLENTRTTQI AAVADSVATL
AQRATDAQRE VISSVEAVLK SAAYIHAAAS QIGRSCSILR ASLRVDLPSI RMLSVADSSG
IIRCSTSSMF VGSDVSNRAY FRKAFETHDF VVSDFVIGQQ SRQGTILAAY PVSAVDTGEE
AVLIAGMNLD WLSDIMANLA GRPGINVALI DGEGTVLATP PDHRSLIGRK LDQSTLDFAL
GARPLEREQA TTSIDSGQTL SVSRIPGTNA RLVVTLDENI VSAAISRDIR TAYLQLALVC
LLVLLGALIA AERLIVRPIS VLTSIANQFA QGDWSARVTR ARLPAEFLPL ARAFNAMAAQ
LGQRERELVA SNNSLTVMAS MDLLSGLANR RGFQSRLDFE WMRGLQNGHT VALLLLDVDY
FKSFNDSYGH PEGDACLSRI GETLATVAND TGGFAARYGG EEFCLLLPDT DADTAYQVGE
MVRATVERLD VPHHTSLFQR VTVSIGVAST SPTEDASPAE LIEAADAALY AAKGRGRNTV
VEHGFIRATD TISMAIAS
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