Gene RPD_0421 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0421 
Symbol 
ID4020887 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp485824 
End bp486531 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content62% 
IMG OID637960606 
Productimport inner membrane translocase, subunit Tim44 
Protein accessionYP_567560 
Protein GI91974901 
COG category[S] Function unknown 
COG ID[COG4395] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGATATTT ACACCATCAT CTTCCTTGCG CTTGCGGTGT TTATTTTCCT GCGTCTGCGC 
AATGTGTTGG GTCAACGGAC TGGTAGCGAA CGCCCACCGT TCGACCGAGC CGCTGCGCGG
GACATGATCC CCGGCAAGCA GGATAACAAC GTGGTGCCGA TGCCCGGCAC GGTGATCGAC
CAGTCGCCAA CTGCGCCGAA CGCCGATGTG GTTCCTCCGT CGGATCGCTG GAAGGGCATT
GCCGAGCCGG ATTCGCCGTT GGCGCATGGC CTCAACGCGG TGTTGGTTCA GGACTCCTCG
TTCGACGCCA ATCATTTCCT CACCGGCGCC AAGAGCGCCT ATGAGATGAT CGTGATGGCG
TTCGCGAACG GCGATCGCCG CGCGCTGCGC GACCTGCTGT CGACCGAGGT CTATGACAGC
TTCGACGCGG CGATCAAGGA TCGCGAGAAG AACGAGCGCA AGACCGAAAC CCGCTTCGTT
GCGATCGACA AGGCGGAGCT GCTCGGCGCC GAAGTGCGCG AGCACACCGC CCAGCTCACG
GTGAAGTTCG TGTCGCAGAT GATCTCGGTC ACCCGCGACA AGGCCGGGGC GATCGTCGAT
GGCAACCCCG ACAAGGTCGC CGATATCACC GACGTTTGGA CCTTCGCCCG CGACATCAGC
TCGCGTGATC CGAACTGGAA GCTGGTTGGC ACGGGAAGCG GTCACTAA
 
Protein sequence
MDIYTIIFLA LAVFIFLRLR NVLGQRTGSE RPPFDRAAAR DMIPGKQDNN VVPMPGTVID 
QSPTAPNADV VPPSDRWKGI AEPDSPLAHG LNAVLVQDSS FDANHFLTGA KSAYEMIVMA
FANGDRRALR DLLSTEVYDS FDAAIKDREK NERKTETRFV AIDKAELLGA EVREHTAQLT
VKFVSQMISV TRDKAGAIVD GNPDKVADIT DVWTFARDIS SRDPNWKLVG TGSGH