Gene RPD_0354 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0354 
Symbol 
ID4020819 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp418647 
End bp419438 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content59% 
IMG OID637960538 
Productenoyl-CoA hydratase/isomerase 
Protein accessionYP_567493 
Protein GI91974834 
COG category[I] Lipid transport and metabolism 
COG ID[COG1024] Enoyl-CoA hydratase/carnithine racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000842665 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGACCGACT GGAAGACCAA ATACAAGCTG ATCACCTTTG ATAATGACAA AGGGGTGCTC 
ACCGTGTCCT TCAGCCGGGA AGCGAAGCTG AACGCGGTTG ATGCACGAAT GCACACCGAA
ATGTCGTGGC TGTGGGGCGA TGTCGCGCGC GACGAGGCAA CGCGCGCAGT CCTTCTCACC
GGCGCCGGCG CGGCTTTCTC CGCTGGAGGC GATCTCGACT GGTTCAAGAC GATGACACCG
GATGCGCTGG ACAGGCTGTT CATCGAGGCG CGGCGCATCA TTGTGGACAT GCTGGAGGTG
CCGCAACCCA TCATCGCGGC CGTCAACGGC GCTGCGACCG GGCTGGGAGC GACGCTGGCG
CTCATGAGCG ACATCATCTA CGCATCCGAG AAGGCGACGA TCGCCGATAC CCATGTTCTG
GCCGGCATTG GCGCGGGAGA TGGAGGTGTG GTGATCTGGC CGTGGCTTTG CGGTATGGCA
CGGGCGAAAG AGTATCTGAT GACAGGTCAG AAACTCAACG CACGGGAAGC TCACAGCATC
GGGCTGGTCA ATCACGTCGT CGCCCATGAC GAGTTGTTGG ACACGGCCAC CAGGATGGCA
CGCAGACTCG CCGACGGACC GCAATTGGCC ATTCGCGGAA CGAAATTCTC ACTGAACAAG
ATACTTCGTG AAGCGGTCAA TCTCACGCTC GATACCTCGC TCTCGCTGGA GAAGGAGTGT
TTTCATTCCG CCGACCATCG CGAATGCATC GACGCATTCC TGGAAAAGCG AAAACCCCAA
TTCAATCGTT AA
 
Protein sequence
MTDWKTKYKL ITFDNDKGVL TVSFSREAKL NAVDARMHTE MSWLWGDVAR DEATRAVLLT 
GAGAAFSAGG DLDWFKTMTP DALDRLFIEA RRIIVDMLEV PQPIIAAVNG AATGLGATLA
LMSDIIYASE KATIADTHVL AGIGAGDGGV VIWPWLCGMA RAKEYLMTGQ KLNAREAHSI
GLVNHVVAHD ELLDTATRMA RRLADGPQLA IRGTKFSLNK ILREAVNLTL DTSLSLEKEC
FHSADHRECI DAFLEKRKPQ FNR