| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0308 |
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| Symbol | |
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| ID | 4020767 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 356488 |
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| End bp | 358239 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637960486 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_567447 |
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| Protein GI | 91974788 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.343771 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCATCGG CCGATCCCGC GTCTGACCAC GCCTCCGCGC CGCCCCGGTC GGTCGGCCCC
GACCCCTCGG CGATCCTGGC CGCGCTCGGG CAAGCGGCCT TCGTCTGGGA TCTGGCGACC
GACGCCATCA TCTGGACCGG CCGCGCTTCC GATCTGTTTC AGGACATTCC CGCCGAGACG
CTGTCGACCG GCGCCGGCTA CGCCTCGTTG CTCGAGCCGT CGCGGGCGAT CCGCGCCGAC
GCGCTGCTCA ACGGAGCCGC CGCAGCCGGG GAAAACTGCG TACCGTACCG CATCGAATAC
GGCGTCCGCG CCGCGACCTC GGCGCCGATC ATCTGGATCG AGGAAAGCGG CTTCTGGTAC
CCCGGAGCCG ATGGCCGGCC CGCCTCCGTC GAGGGCATCG TCCGGATCAA CAACGAACGC
CACGCCCGCG AACAGCAGCT ATTGCAGCTC TCGCAGCACG ATCCGCTCAC CGGCGAACTC
AACCGCACCT ATCTGGTCGC GGCGCTGGCC GAATCGATCG AAGAAGCAGC GCGTTTCCGC
AGCAGCCTCT GCTTCATGCT GATCGGCCTC GACCATCTGG CGCGGATCAA CGATTCGTTC
GGGTTCGACG TCGCCGACGA ACTGATCTGC ACCATCGCCC AGCGGATCCG CGCGCGGCTG
CGCTCCGGCG ATCAGCTCGG CCGGTTCTCC GGCAACAAGT TCGGGCTGAT CCTGAAGAAT
TGCACGGTCG ACGACGCCCA GGTCGCGGCG GAGCGTTTCC TCATCGCCGT GCGCGACGAG
ATCGTGCCGA CCCGATCAGG CCCGGTATCG GTGACGGCGT CGATCGGCGC GGTCAGTTCG
CCGCGCCATG CCCGCACGGC CGAGGAAGCA ATCAATCGCG CCCAGGAGGC GCTGTCCGCA
GCCAAGCACC GCCGCTGTGG CGCGTTTTCG ATGTGGCGGC CGAATGTCGA GCGCGACGCC
CAGCGCCGGG TCAACATCCG CGTCACCGAC GAGATCGTCA CCGCGCTTAA TGAGCGGCGG
ATCGTGCTCG CCTACGAGCC GGTGGTCGAC GTCGCGACGC GCGCGCCGGC GTTTCACGAA
TGCCTTGTCC GGATGATGCA GGATGACGGC CAGGTATTGC TCGCGCCCGA CATTGTGCCG
GTGGCGGAGC GGCTCGGGCT GATCCGGCTG GTCGATCATC GGGTGCTCGA ACTGGTCGTC
GCCGAACTGG CGGCGTCGCC CCAGATGACG CTCAGCCTCA ATATCTCGCC GGACACCACC
ATGGACGCCG ACTGGTGGGC CGGAATCGAA TCGCTGATGC TGGCCCATCC CGGCGTCGCC
GAGCGGCTGA TCGTCGAGAT CACCGAAACG GTGGCGATCC AGGACATCGA CGAAGTGCGC
GGCTTCGTCA CCCGGCTGAA GAAATTCGGC TCGAAGATCG CGATCGACGA TTTCGGCGCC
GGCTACACCT CGTTCCGCAA TCTGCGCAAT CTCGGCGTCG ACATCGTCAA GATCGACGGC
GCTTTTGTAC AGAACATCGC GCGCTCGGTG GACGACCGCG CCTTCGTCCA GACGCTGATC
GATCTGGCGC GGCGGCTCGG CATCAAGACT GTCGCCGAAT GGGTGCAGGA TGAGGAATCC
GCGCTGCTCC TGCGCGACTG GGGCTGCGAT TATATCCAGG GTCGGCTGAT CGGCCTCGCC
TCGCAGCAGC GTCCGTCCGA CGTGCCGGCC GCGGCGATCG CCGCCGCGGT CCGGGAGCGG
GTTGCGAACT GA
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| Protein sequence | MPSADPASDH ASAPPRSVGP DPSAILAALG QAAFVWDLAT DAIIWTGRAS DLFQDIPAET
LSTGAGYASL LEPSRAIRAD ALLNGAAAAG ENCVPYRIEY GVRAATSAPI IWIEESGFWY
PGADGRPASV EGIVRINNER HAREQQLLQL SQHDPLTGEL NRTYLVAALA ESIEEAARFR
SSLCFMLIGL DHLARINDSF GFDVADELIC TIAQRIRARL RSGDQLGRFS GNKFGLILKN
CTVDDAQVAA ERFLIAVRDE IVPTRSGPVS VTASIGAVSS PRHARTAEEA INRAQEALSA
AKHRRCGAFS MWRPNVERDA QRRVNIRVTD EIVTALNERR IVLAYEPVVD VATRAPAFHE
CLVRMMQDDG QVLLAPDIVP VAERLGLIRL VDHRVLELVV AELAASPQMT LSLNISPDTT
MDADWWAGIE SLMLAHPGVA ERLIVEITET VAIQDIDEVR GFVTRLKKFG SKIAIDDFGA
GYTSFRNLRN LGVDIVKIDG AFVQNIARSV DDRAFVQTLI DLARRLGIKT VAEWVQDEES
ALLLRDWGCD YIQGRLIGLA SQQRPSDVPA AAIAAAVRER VAN
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