Gene RPD_0307 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0307 
Symbol 
ID4020766 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp355878 
End bp356486 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content58% 
IMG OID637960485 
Productpolyhydroxyalkanoate synthesis repressor PhaR 
Protein accessionYP_567446 
Protein GI91974787 
COG category[S] Function unknown 
COG ID[COG5394] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR01848] polyhydroxyalkanoate synthesis repressor PhaR 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.724282 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.278491 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTGTGG GTGCCATGGC GAAATCAGAC CAACCAACGA CAATCAAAAA ATACGCGAAC 
CGGCGGCTCT ACAACACCGG CACCAGTACT TACGTCACAC TCGAAGACCT CGCGTCGATG
GTGAAGGACG GCGAAGACTT TCTCGTCTAC GACGCCAAGA CCGGCGACGA CATCACCCGC
TCTGTGCTGG CGCAGATCAT CTTCGAACAG GAGAACAAGG CCGGGCAAAA CCTGCTACCG
ACGACCTTCC TGCGCCAGCT GATCCGCTTC TACGGCGACA GCATGCAGAT GGTGGTACCG
AAATATCTCG AGCAGTCGAT CGACTCGCTG ACCCGCGATC AGGAAAAGTT TCGCAAGCAG
CTGACCAGCA CCTTCAGCCT GACGCCGTTC GGACCGCTGG AGGAGACCGT CCGCCGCAAT
ATGGAGTTGT TTCAGCAGAC CTTCTCGATG TTCGTTCCGA TCAAGCCGAG CCACGGGCCG
CAGACCGACG AAGTGGCCGT CGAGGTGACG AGCGGGACCG ACAACATCGA CGACCTGCGC
CGTCAGATGA AGGATATGCA GGAGCGGCTC GACCGGATGT CGCTCGATCA CCCGAAGAAA
GAAGAGTAG
 
Protein sequence
MRVGAMAKSD QPTTIKKYAN RRLYNTGTST YVTLEDLASM VKDGEDFLVY DAKTGDDITR 
SVLAQIIFEQ ENKAGQNLLP TTFLRQLIRF YGDSMQMVVP KYLEQSIDSL TRDQEKFRKQ
LTSTFSLTPF GPLEETVRRN MELFQQTFSM FVPIKPSHGP QTDEVAVEVT SGTDNIDDLR
RQMKDMQERL DRMSLDHPKK EE