Gene RPD_0305 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0305 
Symbol 
ID4020764 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp353514 
End bp354239 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content61% 
IMG OID637960483 
Productacetoacetyl-CoA reductase 
Protein accessionYP_567444 
Protein GI91974785 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01829] acetoacetyl-CoA reductase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.108778 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.261711 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCGTG TAGCATTGGT GACAGGGGGA ACGCGCGGAA TCGGTGCGGC AATCAGTAAG 
GCGCTGAAGG CGGCAGGCTA TGCGGTCGCA GCGTCCTATG CGGGCAATGA TTCGGCAGCG
GAAAAATTCA AGAGCGAGAC GGGTATCCCG GTATACAAGT GGGATGTGAG TTCGTTCGAG
GCCTGTGCGG CGGGCGTGAA ACAGGTCGAG GCCGATCTCG GACCGGTCGA CATTCTCGTC
AACAATGCCG GCATCACCCG TGACGGCGCA TTTCACAAGA TGACGCTCGA ACAGTGGAAC
GCGGTGATCA ACACCAATCT CGGTTCGCTG TTCAACATGA CGCGCCAAGT GATCGAGGGG
ATGCGCGCGC GCAAGTTCGG CCGCATCGTC AACATCTCGT CGGTCAACGG CCAGAAGGGC
CAGTTCGGCC AGGTCAATTA TTCCGCGGCG AAAGCCGGCG ACATCGGCTT CACCAAAGCG
CTTGCGCTGG AAAACGCGCG CGGCGGCATC ACCGTCAATG CGATCTGCCC CGGTTACATC
AACACCGAAA TGGTGCAGGC GGTGCCGAAA GAAGTGTTGG AGAAGGCGAT CCTGCCGCTG
ATTCCGTGCA ACCGGCTCGG CGAGGCTGAC GAGATCGCAC GCGCGGTGGT GTTCCTCGCC
GCCGAGGATT CCGGCTTCAT CACCGGTTCG ACGCTGTCGA TCAATGGCGG CCAGGTGATG
ACCTGA
 
Protein sequence
MARVALVTGG TRGIGAAISK ALKAAGYAVA ASYAGNDSAA EKFKSETGIP VYKWDVSSFE 
ACAAGVKQVE ADLGPVDILV NNAGITRDGA FHKMTLEQWN AVINTNLGSL FNMTRQVIEG
MRARKFGRIV NISSVNGQKG QFGQVNYSAA KAGDIGFTKA LALENARGGI TVNAICPGYI
NTEMVQAVPK EVLEKAILPL IPCNRLGEAD EIARAVVFLA AEDSGFITGS TLSINGGQVM
T