| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0294 |
|---|
| Symbol | |
|---|
| ID | 4020753 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 338433 |
|---|
| End bp | 339047 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637960472 |
|---|
| Product | shikimate kinase |
|---|
| Protein accession | YP_567433 |
|---|
| Protein GI | 91974774 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0703] Shikimate kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.638845 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAAA TCGCACCGCC GGCCGACGCC GCCCGGTCCC AGGAAGCCGA GATCGTCGCG
GCGCTGGGCG AGCGCGCGGT CGTGCTGATC GGCATGATGG GCGCCGGCAA GTCGACCGTC
GGCCGCCGTC TGGCGCTGCG GCTCGGGCTG CCGTTTCTCG ACGCCGACAC CGAGATCGAG
TCCGCCGCGG CGATGACCAT CCCGGAGATT TTCGACACTC ACGGCGAGCC GCATTTCCGC
GACGGCGAGG CGCGGGTGAT CGCGCGGCTG CTCGACGGCG GCGCCAAGGT TCTGGCGACC
GGCGGCGGCG CCTTCATGCG CGAGGAAACC CGCGACCGGA TCCGCGACAA AGCGGTGTCG
CTGTGGCTCG AAGCCGACGC CGACGTGATC CTGCGGCGGG TGAAGCGTCG CGCCGATCGG
CCGCTGCTCA AGACGCCGGA TCCCGCCGGG ACCATCGCCC GGCTGATCGA TGAGCGCTAT
CCGGTGTATC GCAGCGCCGA CCTCACCATC GCGTCGCGCG ACGTGCCGCA CGAGAAGATC
GTCGATGAAT GCGTTGCGGC GTTGCACGGC TATCTGTGCT GCGCCGCTGC GCCAACCCTG
AGCGAGACCC CATGA
|
|---|
| Protein sequence | MSEIAPPADA ARSQEAEIVA ALGERAVVLI GMMGAGKSTV GRRLALRLGL PFLDADTEIE
SAAAMTIPEI FDTHGEPHFR DGEARVIARL LDGGAKVLAT GGGAFMREET RDRIRDKAVS
LWLEADADVI LRRVKRRADR PLLKTPDPAG TIARLIDERY PVYRSADLTI ASRDVPHEKI
VDECVAALHG YLCCAAAPTL SETP
|
|---|
| |