Gene RPD_0284 details

Gene Information

• Locus tag: RPD_0284
• ID: 4020743
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris BisB5
• Kingdom: Bacteria
• Replicon accession: NC_007958
• Strand: +
• Start bp: 326692
• End bp: 330009
• Gene Length: 3318 bp
• Protein Length: 1105 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 637960464
• Product: multi-sensor hybrid histidine kinase
• Protein accession: YP_567425
• Protein GI: 91974766
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.0846765
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

TTGAATAGGC CGATCGGTCA GAACAACTAT GCCCCGGATA CCGCGCCCGA TCTGGATTCG 
TTGGGACCGC GATGCCCCCG CATCGAAGCG GGCGCGATGA AGCTGTCCAC GCGCCTGACG 
CTGGCGATGG TCGCGCTGGT TCTTGTGACC ACAGCAGTGC TCGGCTTCTT GAACTATCGC 
AGCATCGTCG AACTGGTGAT GCCGCGCGCG CTGAAGCAGT TGCAGACCCA CGCGCAGCTC 
AATGCGTTGT TGATGGATGC GCATCTGCGC GGCGCCCGGG CGGACGCGGT GGGTGCGCAG 
GCGTCCAGCA CTCTGCGCGA CCTGCTGTTG AGCCGGCTAA AAACCACGGA GACGCCAGGC 
GAGCCGGCGC CGGAATGGCG CCGGCGCATC GAGGCGCGCT TCGCCGCGGA ACTGGTCGCA 
AAGCCGACCT ACGCCATTCT GCGCATCATT GGCCCCGAGG ACGGCGGCCG CGAGCTGGTC 
CGGGTCGATC GCCTGGGACC GAATGGCGGG ATTCGCGCGG TGCCGGTATC GCAACTGACG 
CGGCGCGGCG ACCGCAGCTA CGTCCGGGAA GGACTGGCGC TTCCGCGGAA CGAAGTCGCT 
GTCTCCAAGA TCGAACTGAA CAGAAACGAG ACCGGACTCG AGATCCCCTA CGTTGCTACG 
ATGCGAACGA TGGCGCCGAT CGACGCGCCC GACGGCACGC GCCTCGGCGT GCTGGTGATC 
AACACCAACC TGAGCGAGAA CCTCGAACGG GTCCGCGACA GCGTCACCCG CGGAAACCTG 
ATCTACATCG TCAACGCCGC AGGCGACTAT CTCCTGCACC CCGATCGCTC GCGCGAATTC 
GGCTTCGATC GTGGCACTCC CAGCCGCATC CAGGATGACT TCCCTGCGTT CGCCGCCCTG 
CTGGACGGCA AGGATGAAGC GCCGCGGGTG ATGGAGAGCA GCACCGGACA ACGCTTCGGC 
GTCGGCTGGG ATTGGGTGCG GCTCGCCGAC GGACCGAGGG TCGGCGTGAT CGAAATGCGC 
AGCTATGCAT CGCTGACCTC GGTGCCGAGA GCCGTGCGTG ACGCGACGCT GACGGGCGGC 
GCGGCCGCAA TTCTGGTGGC GATGCTGATG GCCGTGCCGC TGGCGCGATC TTTGACCCGA 
CCGCTGGTCC GGATCACCAG ATCGGTTCAG GCTTTCGCGC GGGGAGAAAA GTTCGAACTC 
ACGCCCGGCG GAAGCCAGGA GATCAATCTG CTGGCCGACG CCTTCTCCCA GATGACCCAC 
GAAGCAAATC GCAAGGCGAT CGCCCTTGCG GCGGAGGTGG AGGAGCGCAC CCGCATCGCA 
GGGGTGTTGC AGAACACCAT CGACATCATG GTCGATCCGG TGCTGGTCGT GGACGCGCGG 
GGCACCGTCA TCCTCACCAA TCCGGCCGCC TGCGAGATGT TCGGCTCGCT GGCCGGCATC 
AGCATCCTCA ACACCACACG CTCGTTCGAT CGCTTCAGCC CCGACGGCAA GCCGCTGACG 
CCCGACAAGT CAGCATTGCT GCGCGCGTTT CTCGGCGAGA CCATCGAGAA TTTCGAGTTC 
ATCGTGCAGC CGATCGGCTC CGCGCGGCGA TCCTATCTGA CCGCCAATGG TCGACCGCTG 
CGCGGCGAGA CCGGTCAGAT CCAGGGCGCG GTGATGGTGT ATCACGACAT CACCAAGACC 
AAGAAAGCCG AGGAGGCGCT GCGCCGCAGC GAACAGATGG CGCGAGCCAT CGTCGATACC 
GCGCTCGACG CCTTCGTGCA GGTTGACGCG CTCGGGACGA TCACCGAGTG GAGCCCGCAC 
GCGGAGCTGG TGCTGGGCTG GCGACGCAGC GAAGCGATCG GCCGCAACGT CTTCCAGTTA 
CTGATTCCGG CCGACCAGCT CGAACGGCGG ACTGAAGAAT TCAAGCGGTT CGCCTCGTCG 
CTCGGCCGCG ACAGCAGCGG TTTCCGGGTC GAGATCGAGG TGCTCCACCA GGACGGAACG 
CCGACTCCGA TCGAAGTGGC GATGACCGCG CTGTATCGCG ACGGCAGCTT CGTCATCAAT 
GCCTTCCTGC GTAACCTCAC CGAGCAGATC GCGTTCGAGG AACAGCTCCG GCAATCGCAG 
AAGATGGAGT CGATCGGTCA GCTCACCGGC GGCATCGCGC ACGACTTCAA CAACATGTTG 
ACGGTGATCA CCGGCACCAT CGACATCATC AGCGACGGTG TCGCCGATCA GCCGCATCTC 
GCCACGATCG CCAAGTTGAT CAGCGAGGCC GCCGACCGCG GCGCGGAGCT GACCCGGCTA 
CTGCTCGCCT TCGCCCGCAA GCAGCCGCTG CGGCCTGACG AGACCGACGT CAACGCGCTG 
GTGGCCGGTC TGCAGAGCCT GCTGCGGCCG ACGCTCGGTG AACAGATCGA GATCGAGACC 
AGTTTCGACG ACGGCGCGTG GCCGATCTAT GTCGATCGTG GTCAGCTCGA ATCGGCGCTG 
GTCAATCTCG CGGTCAATGC ACGCGACGCG ATGCCGAACG GCGGCAAGCT GACGATCGAG 
ACCTGCAACA TCGTCGTCGA TCAGGAGCTC GCCAAGCGGT TCGGCAACGT CGAAAGCGGG 
TCCTACGTGA TGATCGCAAT CAGCGATTCC GGCTGCGGCA TCCCCGATGC GATCCGCGGC 
AAGGTGTTCG ATCCGTTCTT CACCACCAAG GAGGTCGGCA AGGGCACCGG GCTCGGTCTC 
AGCATGGTCT ACGGCTTCAT CAAACAATCC GGCGGCCACA TCACGTTGTA CAGTGAAGTC 
GGCCTCGGCA CCACGTTCCG GCTGTATCTG CCGCGCGCCA GCACTGAAAA CGAACGCGAA 
GCGGCGACGT CATCCGAACA AGGCGCTGTC GGTGGTACGG AAACCATCCT GGTGGTCGAG 
GACGACGCCA TGGTGCGCAG TTACGTCAAC GCACAGCTCA AGAGCCTCGG CTATACGGCG 
CTGTCGGTCG GCAACGCCAC CGCCGCGCTG TCGATCAGCG ACAGTGGCGC CGAATTTGAT 
CTGCTGTTCA CCGACGTGGT GATGCCCGGG CCCTATAATG GCGTGCAACT GGCGGCGGAG 
ATGAGCAAAC GGCGGCCCGG GCTGAAGGTG CTGTTCACAT CCGGTTACTC GGAAAATGCG 
CTGATTTACA ACGACCGACT CGATCCGGAT ATTCTGCTGC TGTCGAAGCC ATATCGGCGG 
GCCGATCTTG CCCGCATGAT TCGCCTGGCG CTGAACTCGA CCGTCGAGTC CGAAGTCATC 
CAGAACGCCG CGGACGAGCA CTTGAAGAAC GAGCGGGTGG ACGACAATGT CGAGCGATCG 
AGCGTCCGGC CGCTGTAG 

 

Protein sequence

MNRPIGQNNY APDTAPDLDS LGPRCPRIEA GAMKLSTRLT LAMVALVLVT TAVLGFLNYR 
SIVELVMPRA LKQLQTHAQL NALLMDAHLR GARADAVGAQ ASSTLRDLLL SRLKTTETPG 
EPAPEWRRRI EARFAAELVA KPTYAILRII GPEDGGRELV RVDRLGPNGG IRAVPVSQLT 
RRGDRSYVRE GLALPRNEVA VSKIELNRNE TGLEIPYVAT MRTMAPIDAP DGTRLGVLVI 
NTNLSENLER VRDSVTRGNL IYIVNAAGDY LLHPDRSREF GFDRGTPSRI QDDFPAFAAL 
LDGKDEAPRV MESSTGQRFG VGWDWVRLAD GPRVGVIEMR SYASLTSVPR AVRDATLTGG 
AAAILVAMLM AVPLARSLTR PLVRITRSVQ AFARGEKFEL TPGGSQEINL LADAFSQMTH 
EANRKAIALA AEVEERTRIA GVLQNTIDIM VDPVLVVDAR GTVILTNPAA CEMFGSLAGI 
SILNTTRSFD RFSPDGKPLT PDKSALLRAF LGETIENFEF IVQPIGSARR SYLTANGRPL 
RGETGQIQGA VMVYHDITKT KKAEEALRRS EQMARAIVDT ALDAFVQVDA LGTITEWSPH 
AELVLGWRRS EAIGRNVFQL LIPADQLERR TEEFKRFASS LGRDSSGFRV EIEVLHQDGT 
PTPIEVAMTA LYRDGSFVIN AFLRNLTEQI AFEEQLRQSQ KMESIGQLTG GIAHDFNNML 
TVITGTIDII SDGVADQPHL ATIAKLISEA ADRGAELTRL LLAFARKQPL RPDETDVNAL 
VAGLQSLLRP TLGEQIEIET SFDDGAWPIY VDRGQLESAL VNLAVNARDA MPNGGKLTIE 
TCNIVVDQEL AKRFGNVESG SYVMIAISDS GCGIPDAIRG KVFDPFFTTK EVGKGTGLGL 
SMVYGFIKQS GGHITLYSEV GLGTTFRLYL PRASTENERE AATSSEQGAV GGTETILVVE 
DDAMVRSYVN AQLKSLGYTA LSVGNATAAL SISDSGAEFD LLFTDVVMPG PYNGVQLAAE 
MSKRRPGLKV LFTSGYSENA LIYNDRLDPD ILLLSKPYRR ADLARMIRLA LNSTVESEVI 
QNAADEHLKN ERVDDNVERS SVRPL