Gene RPD_0284 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0284 
Symbol 
ID4020743 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp326692 
End bp330009 
Gene Length3318 bp 
Protein Length1105 aa 
Translation table11 
GC content64% 
IMG OID637960464 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_567425 
Protein GI91974766 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0846765 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAATAGGC CGATCGGTCA GAACAACTAT GCCCCGGATA CCGCGCCCGA TCTGGATTCG 
TTGGGACCGC GATGCCCCCG CATCGAAGCG GGCGCGATGA AGCTGTCCAC GCGCCTGACG
CTGGCGATGG TCGCGCTGGT TCTTGTGACC ACAGCAGTGC TCGGCTTCTT GAACTATCGC
AGCATCGTCG AACTGGTGAT GCCGCGCGCG CTGAAGCAGT TGCAGACCCA CGCGCAGCTC
AATGCGTTGT TGATGGATGC GCATCTGCGC GGCGCCCGGG CGGACGCGGT GGGTGCGCAG
GCGTCCAGCA CTCTGCGCGA CCTGCTGTTG AGCCGGCTAA AAACCACGGA GACGCCAGGC
GAGCCGGCGC CGGAATGGCG CCGGCGCATC GAGGCGCGCT TCGCCGCGGA ACTGGTCGCA
AAGCCGACCT ACGCCATTCT GCGCATCATT GGCCCCGAGG ACGGCGGCCG CGAGCTGGTC
CGGGTCGATC GCCTGGGACC GAATGGCGGG ATTCGCGCGG TGCCGGTATC GCAACTGACG
CGGCGCGGCG ACCGCAGCTA CGTCCGGGAA GGACTGGCGC TTCCGCGGAA CGAAGTCGCT
GTCTCCAAGA TCGAACTGAA CAGAAACGAG ACCGGACTCG AGATCCCCTA CGTTGCTACG
ATGCGAACGA TGGCGCCGAT CGACGCGCCC GACGGCACGC GCCTCGGCGT GCTGGTGATC
AACACCAACC TGAGCGAGAA CCTCGAACGG GTCCGCGACA GCGTCACCCG CGGAAACCTG
ATCTACATCG TCAACGCCGC AGGCGACTAT CTCCTGCACC CCGATCGCTC GCGCGAATTC
GGCTTCGATC GTGGCACTCC CAGCCGCATC CAGGATGACT TCCCTGCGTT CGCCGCCCTG
CTGGACGGCA AGGATGAAGC GCCGCGGGTG ATGGAGAGCA GCACCGGACA ACGCTTCGGC
GTCGGCTGGG ATTGGGTGCG GCTCGCCGAC GGACCGAGGG TCGGCGTGAT CGAAATGCGC
AGCTATGCAT CGCTGACCTC GGTGCCGAGA GCCGTGCGTG ACGCGACGCT GACGGGCGGC
GCGGCCGCAA TTCTGGTGGC GATGCTGATG GCCGTGCCGC TGGCGCGATC TTTGACCCGA
CCGCTGGTCC GGATCACCAG ATCGGTTCAG GCTTTCGCGC GGGGAGAAAA GTTCGAACTC
ACGCCCGGCG GAAGCCAGGA GATCAATCTG CTGGCCGACG CCTTCTCCCA GATGACCCAC
GAAGCAAATC GCAAGGCGAT CGCCCTTGCG GCGGAGGTGG AGGAGCGCAC CCGCATCGCA
GGGGTGTTGC AGAACACCAT CGACATCATG GTCGATCCGG TGCTGGTCGT GGACGCGCGG
GGCACCGTCA TCCTCACCAA TCCGGCCGCC TGCGAGATGT TCGGCTCGCT GGCCGGCATC
AGCATCCTCA ACACCACACG CTCGTTCGAT CGCTTCAGCC CCGACGGCAA GCCGCTGACG
CCCGACAAGT CAGCATTGCT GCGCGCGTTT CTCGGCGAGA CCATCGAGAA TTTCGAGTTC
ATCGTGCAGC CGATCGGCTC CGCGCGGCGA TCCTATCTGA CCGCCAATGG TCGACCGCTG
CGCGGCGAGA CCGGTCAGAT CCAGGGCGCG GTGATGGTGT ATCACGACAT CACCAAGACC
AAGAAAGCCG AGGAGGCGCT GCGCCGCAGC GAACAGATGG CGCGAGCCAT CGTCGATACC
GCGCTCGACG CCTTCGTGCA GGTTGACGCG CTCGGGACGA TCACCGAGTG GAGCCCGCAC
GCGGAGCTGG TGCTGGGCTG GCGACGCAGC GAAGCGATCG GCCGCAACGT CTTCCAGTTA
CTGATTCCGG CCGACCAGCT CGAACGGCGG ACTGAAGAAT TCAAGCGGTT CGCCTCGTCG
CTCGGCCGCG ACAGCAGCGG TTTCCGGGTC GAGATCGAGG TGCTCCACCA GGACGGAACG
CCGACTCCGA TCGAAGTGGC GATGACCGCG CTGTATCGCG ACGGCAGCTT CGTCATCAAT
GCCTTCCTGC GTAACCTCAC CGAGCAGATC GCGTTCGAGG AACAGCTCCG GCAATCGCAG
AAGATGGAGT CGATCGGTCA GCTCACCGGC GGCATCGCGC ACGACTTCAA CAACATGTTG
ACGGTGATCA CCGGCACCAT CGACATCATC AGCGACGGTG TCGCCGATCA GCCGCATCTC
GCCACGATCG CCAAGTTGAT CAGCGAGGCC GCCGACCGCG GCGCGGAGCT GACCCGGCTA
CTGCTCGCCT TCGCCCGCAA GCAGCCGCTG CGGCCTGACG AGACCGACGT CAACGCGCTG
GTGGCCGGTC TGCAGAGCCT GCTGCGGCCG ACGCTCGGTG AACAGATCGA GATCGAGACC
AGTTTCGACG ACGGCGCGTG GCCGATCTAT GTCGATCGTG GTCAGCTCGA ATCGGCGCTG
GTCAATCTCG CGGTCAATGC ACGCGACGCG ATGCCGAACG GCGGCAAGCT GACGATCGAG
ACCTGCAACA TCGTCGTCGA TCAGGAGCTC GCCAAGCGGT TCGGCAACGT CGAAAGCGGG
TCCTACGTGA TGATCGCAAT CAGCGATTCC GGCTGCGGCA TCCCCGATGC GATCCGCGGC
AAGGTGTTCG ATCCGTTCTT CACCACCAAG GAGGTCGGCA AGGGCACCGG GCTCGGTCTC
AGCATGGTCT ACGGCTTCAT CAAACAATCC GGCGGCCACA TCACGTTGTA CAGTGAAGTC
GGCCTCGGCA CCACGTTCCG GCTGTATCTG CCGCGCGCCA GCACTGAAAA CGAACGCGAA
GCGGCGACGT CATCCGAACA AGGCGCTGTC GGTGGTACGG AAACCATCCT GGTGGTCGAG
GACGACGCCA TGGTGCGCAG TTACGTCAAC GCACAGCTCA AGAGCCTCGG CTATACGGCG
CTGTCGGTCG GCAACGCCAC CGCCGCGCTG TCGATCAGCG ACAGTGGCGC CGAATTTGAT
CTGCTGTTCA CCGACGTGGT GATGCCCGGG CCCTATAATG GCGTGCAACT GGCGGCGGAG
ATGAGCAAAC GGCGGCCCGG GCTGAAGGTG CTGTTCACAT CCGGTTACTC GGAAAATGCG
CTGATTTACA ACGACCGACT CGATCCGGAT ATTCTGCTGC TGTCGAAGCC ATATCGGCGG
GCCGATCTTG CCCGCATGAT TCGCCTGGCG CTGAACTCGA CCGTCGAGTC CGAAGTCATC
CAGAACGCCG CGGACGAGCA CTTGAAGAAC GAGCGGGTGG ACGACAATGT CGAGCGATCG
AGCGTCCGGC CGCTGTAG
 
Protein sequence
MNRPIGQNNY APDTAPDLDS LGPRCPRIEA GAMKLSTRLT LAMVALVLVT TAVLGFLNYR 
SIVELVMPRA LKQLQTHAQL NALLMDAHLR GARADAVGAQ ASSTLRDLLL SRLKTTETPG
EPAPEWRRRI EARFAAELVA KPTYAILRII GPEDGGRELV RVDRLGPNGG IRAVPVSQLT
RRGDRSYVRE GLALPRNEVA VSKIELNRNE TGLEIPYVAT MRTMAPIDAP DGTRLGVLVI
NTNLSENLER VRDSVTRGNL IYIVNAAGDY LLHPDRSREF GFDRGTPSRI QDDFPAFAAL
LDGKDEAPRV MESSTGQRFG VGWDWVRLAD GPRVGVIEMR SYASLTSVPR AVRDATLTGG
AAAILVAMLM AVPLARSLTR PLVRITRSVQ AFARGEKFEL TPGGSQEINL LADAFSQMTH
EANRKAIALA AEVEERTRIA GVLQNTIDIM VDPVLVVDAR GTVILTNPAA CEMFGSLAGI
SILNTTRSFD RFSPDGKPLT PDKSALLRAF LGETIENFEF IVQPIGSARR SYLTANGRPL
RGETGQIQGA VMVYHDITKT KKAEEALRRS EQMARAIVDT ALDAFVQVDA LGTITEWSPH
AELVLGWRRS EAIGRNVFQL LIPADQLERR TEEFKRFASS LGRDSSGFRV EIEVLHQDGT
PTPIEVAMTA LYRDGSFVIN AFLRNLTEQI AFEEQLRQSQ KMESIGQLTG GIAHDFNNML
TVITGTIDII SDGVADQPHL ATIAKLISEA ADRGAELTRL LLAFARKQPL RPDETDVNAL
VAGLQSLLRP TLGEQIEIET SFDDGAWPIY VDRGQLESAL VNLAVNARDA MPNGGKLTIE
TCNIVVDQEL AKRFGNVESG SYVMIAISDS GCGIPDAIRG KVFDPFFTTK EVGKGTGLGL
SMVYGFIKQS GGHITLYSEV GLGTTFRLYL PRASTENERE AATSSEQGAV GGTETILVVE
DDAMVRSYVN AQLKSLGYTA LSVGNATAAL SISDSGAEFD LLFTDVVMPG PYNGVQLAAE
MSKRRPGLKV LFTSGYSENA LIYNDRLDPD ILLLSKPYRR ADLARMIRLA LNSTVESEVI
QNAADEHLKN ERVDDNVERS SVRPL