| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0260 |
|---|
| Symbol | |
|---|
| ID | 4020718 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 299022 |
|---|
| End bp | 300143 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637960439 |
|---|
| Product | perplasmic binding protein of ABC transporter |
|---|
| Protein accession | YP_567401 |
|---|
| Protein GI | 91974742 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.519956 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCCG CCTTCCTGCT GCGAGCGTTA ACCGGGGCCG TCGCCGTAGC TTTGCTGGCC
GTGCCGGTCC ACGCTTCGCC GCCGCCGGCT CCGGAAAAGC CGGTGGAAAA GCCTGCCCCG
CCGCCGCCGC CGAAGAAGCC CCCTCCGCCG GTGGTGCAGC CGGTCCGCAA AGTGCCGGAA
GGCGGCTTCG ATAAGGTGTC GTTCGGCACC AATTGGGTCG CCGAGGGCGA GCATGGCGGG
TTCTTCCAGG CGGTCGCCGA CGACACCTAC AAGAGCTACG GCCTCAACGT GACGATCGTG
CCGGGCGGAC CCAACGTCAA CAATCGCGCC TTGCTGCTCG CCGGCAAGCT CGACTTCTTC
ATGACCGCGA ACACGCTGCA ATCGTTCGAC GCCGTCGCCA ACAACGTACC GGTGGTGGCG
ATCGCCGCGG TGTTCCAGAA GGATCCGCAG GTGTTCCTGA CGCATCCGGA ATCCAAGGTC
GGACAGCTCG ACGACTTGAA ACGTCTGACG CTGTTCGTCT CCAAGGAAGG CATCGCCAGC
TACTTCCAGT GGCTGAAATC CGAATACGGC TTCAACGAAG CCAAAGTGAA GCCCTACACC
TCGAACCCGC AGCCCTTCAT CGTCGATCGC AACGCCGCGA TGCAGGGCTA TGTCACTTCC
GAGCCGTTCG TGATCGAGCA GAAAGCGAAG TTCAAGCCGA GCGTGCTGCT GCTCGCCGAT
TACGGCCTCG ACGGTTACTC GACGCTGATC GAGACCCGGC GCGACCTGAT CGACAAGAAC
CCCGACATGA TCCAGCGCTT CGTCGACGCC TCGATGATCG GCTGGTACAA TTATCTGTAC
GGCGACAACG CCGCCGGCAA CGCGCTGATC AAGTCGCTCA ATCCGGAGAT GACCGACGAG
ATGCTGGCCT ATTCGGTCGC CAAGATGAAG GAGTACGGCA TTGTCGATTC CGGCGACACG
CTGCGCAACG GCATCGGCGC GATGAGCGAC GAGCGCTACG CCAGCTTCTT CGACAAGATG
TCGCGCGCCG GCGTGGTGAA GCGCGATCTC GATTTCCGCC AGGCCTATAC GCTGCAATTC
ACCAACAAGG GCGTCGGCGT CGATCTGCGC CCGAGCAGGT AG
|
|---|
| Protein sequence | MTPAFLLRAL TGAVAVALLA VPVHASPPPA PEKPVEKPAP PPPPKKPPPP VVQPVRKVPE
GGFDKVSFGT NWVAEGEHGG FFQAVADDTY KSYGLNVTIV PGGPNVNNRA LLLAGKLDFF
MTANTLQSFD AVANNVPVVA IAAVFQKDPQ VFLTHPESKV GQLDDLKRLT LFVSKEGIAS
YFQWLKSEYG FNEAKVKPYT SNPQPFIVDR NAAMQGYVTS EPFVIEQKAK FKPSVLLLAD
YGLDGYSTLI ETRRDLIDKN PDMIQRFVDA SMIGWYNYLY GDNAAGNALI KSLNPEMTDE
MLAYSVAKMK EYGIVDSGDT LRNGIGAMSD ERYASFFDKM SRAGVVKRDL DFRQAYTLQF
TNKGVGVDLR PSR
|
|---|
| |