| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0229 |
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| Symbol | truB |
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| ID | 4020687 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 265606 |
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| End bp | 266712 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637960408 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_567370 |
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| Protein GI | 91974711 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00860319 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.483452 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATGA CCACCTCCGC CGACACGCTC GCTCCGCAAG ACGTGCAGCA CGCCGGCGAC
GACGCTCCCT CCTCCGCGCA GCTCCGCAAG CCGCGTGACA ACAACGATCC GCGCAACACC
GCCCGCGGCA AGGACGGCAA CAACAAGCAG CCGCGCCGCG ACAAGCGCGA CGTCCACGGC
TGGGTGGTGC TCGACAAGCC GATCGGCATG ACCTCGACCC ATGCGGTCGC CGTGGTGAAG
CGGCTGTTCT CGGCCAAGCG CGCCGGCCAT GCCGGCACCC TCGATCCGCT CGCCTCCGGC
GGGCTGCCGA TCGCGATGGG CGAAGCCACC AAGACGGTGC CGTTCGTGAT GGACGGCCGC
AAGCGCTACC GCTTCACCGT GGCGTGGGGT GAGGAGCGCG ACACCGACGA CACCGAGGGC
AAGGTCACGC AGGCGAGCGA CCTCCGCCCG ACCCCGGAGG CGATCCGGGC GCTGCTGCCG
CAGTTCACCG GCCTGATCGA GCAGACCCCG CCGCAATATT CCGCGATCAA GATCGCGGGC
GAGCGCGCCT ACGACATGGC GCGCGACGGC GAAATCGTGC CGCTGGTTCC GCGGCCGGTC
GAGATTCACG AATTAAGCCT TGTCGAACAT GATGATAGCG GCAAGTCGGT GTTCGAGGCG
GAATGCGGCA AGGGAACCTA TGTGCGGGCG CTGGCGCGCG ACATGGGCCG GTTGCTCGGC
TGCTACGGCC ATATCTGCGC GCTGCGCCGG ACCCTGGTCG GGCCGTTCGA CGAGGCGGAC
ATGATTCCGC TGGAACAACT GCAGGCTTTG TGCGATAGAG CCGCGTCAGG CGAGGGTAGC
CTCGCCGACG CGCTTTTGCC CGTTGAGACC GCGCTGGACG ACATCCCGGC ACTGGCCGTC
ACACGGGCTG ATGCGGCAAG GCTCCATCGG GGCCAGGCCG TTTTGTTGCG CGGACGGGAT
GCGCCCATTT CTAGCGGCAC TGTCTATGTC ACGGTGGCAG GCCGGCTTCT GGCCCTCGCC
GAGCTCGGCA ATGGCGAACT CATCCCCAAG CGTGTGTTCA ACCTCTCCGG ACTGACAGCC
AGTTCGGCTC GCAAGGAAAG TCTCTGA
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| Protein sequence | MTMTTSADTL APQDVQHAGD DAPSSAQLRK PRDNNDPRNT ARGKDGNNKQ PRRDKRDVHG
WVVLDKPIGM TSTHAVAVVK RLFSAKRAGH AGTLDPLASG GLPIAMGEAT KTVPFVMDGR
KRYRFTVAWG EERDTDDTEG KVTQASDLRP TPEAIRALLP QFTGLIEQTP PQYSAIKIAG
ERAYDMARDG EIVPLVPRPV EIHELSLVEH DDSGKSVFEA ECGKGTYVRA LARDMGRLLG
CYGHICALRR TLVGPFDEAD MIPLEQLQAL CDRAASGEGS LADALLPVET ALDDIPALAV
TRADAARLHR GQAVLLRGRD APISSGTVYV TVAGRLLALA ELGNGELIPK RVFNLSGLTA
SSARKESL
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