Gene RPD_0215 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0215 
Symbol 
ID4020673 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp246901 
End bp247701 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content70% 
IMG OID637960394 
ProductUBA/THIF-type NAD/FAD binding fold 
Protein accessionYP_567356 
Protein GI91974697 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0476] Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0516175 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGAGCG CCGACGAGCT GGAACGCTAC GCCCGCCATA TCGTGCTGCG CGAGGTCGGC 
GGGCCCGGAC AGGCGGCGCT GCGCCGCGCG CGGGTGCTGG TGGTGGGCGC CGGCGGGCTC
GGCGCGCCGG TGCTGATGTA TCTCGCCGCG GCCGGAATCG GCACGCTCGA TATCGTCGAC
AACGACGAGG TGTCGCTGTC GAATCTGCAG CGGCAGGTGA TCCACGCCAC GCCCGATATC
GGCAAGCGCA AGGTCGACAG CGCGGCGGCG CGGATCAAGG CGCTCAACCC GCATGTCGAG
GTGAGGCCGC ACGCGCTGCG GCTGACGCCG GCCAACGCGC TGGATTTGAT CGACGGCTGC
GACCTGGTGC TCGACGGCTC GGATAATTTT GCGACGCGCT ATCTGGTGTC GGACGCCTGC
TTCATCGCAA GGACGCCGCT GATCACCGCG GCGCTGGGGC CGTTCGACGG TTCGCTGACC
ACGATCCGCG CCCACGAGAA AAACCCGGCC GGCGAGTTCA ACCCGACCTA TCGCTGCCTG
TTTCCGGAAG CGCCGCCGCC CGGCACGGTG CCGGCCTGCG AGGAGGCCGG GGTGATGGGC
GCGCTCGCCG GGATGCTCGG CTCGATGATG GCGCTGGAGG CGATCCGCGA GATCGTCGGC
TTCGGCGAGG GGCTGGTCGG GCGGCTGTTG ATGATCGACG CCCGCGCGAT GCGATTCGAG
ACGCTGCGCT ACAGCCGCGA TCCGGCCAAT CCGCTGAACG GGGATGCGCC GAGGGTGACG
GATCTGAGCG GGCATCCGTA G
 
Protein sequence
MLSADELERY ARHIVLREVG GPGQAALRRA RVLVVGAGGL GAPVLMYLAA AGIGTLDIVD 
NDEVSLSNLQ RQVIHATPDI GKRKVDSAAA RIKALNPHVE VRPHALRLTP ANALDLIDGC
DLVLDGSDNF ATRYLVSDAC FIARTPLITA ALGPFDGSLT TIRAHEKNPA GEFNPTYRCL
FPEAPPPGTV PACEEAGVMG ALAGMLGSMM ALEAIREIVG FGEGLVGRLL MIDARAMRFE
TLRYSRDPAN PLNGDAPRVT DLSGHP