Gene RPD_0179 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0179 
Symbol 
ID4020636 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp203618 
End bp204226 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content64% 
IMG OID637960357 
Productsigma 54 modulation protein/ribosomal protein S30EA 
Protein accessionYP_567320 
Protein GI91974661 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1544] Ribosome-associated protein Y (PSrp-1) 
TIGRFAM ID[TIGR00741] ribosomal subunit interface protein 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.416833 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCATCC GGGTCTCCGG CAAGAGCATC AGCGTCGGCG AAGCGCTGCG CGGCCGTGTC 
AGCGAGCGCA CCGAAGAGGT GTTGCGCAAA TATTTCGATG GCAATTATTC GGGCCATATT
ACGCTGAGCA AGGACGGCTT TGGATTCCGC ACCGACTGCT CGCTGCATCT CGATTCCGGC
ATCACGCTGG AAGCCGAGTC GAACGCTGCC GATGCTTATG TCAGCGCCGA TCAGGCGCTG
CTGCAAATCG AGAAGCGGCT GCGCCGCTAC AAGAGCCGGC TGAAGGATCG CTCGTCCCGC
AAGGCCCATG CCGAGGCGAC CGCCCTGGCC GAACTGACTG CGCCGGTCGA CATGCCGAGC
TACGTCATCG AGGCGCCCGG CGACGAGGAG CATCACGAGG ACGCGTATAA TCCGGTGATC
ATCGCCGAGG CCACCACCGC CATGAAGCGT CTGTCGGTCA GCGAAGCCGT GGTGGAGCTC
GACCTCACCG GCGCGCCGGT GCTGATCTTC CTTCACGGCG GCTCCGGCCG TGTGAACATC
ATCTACCGTC GCGCCGACGG CAATATCGGT TGGATCGATC CGCCGTCGCT GAACGGCGCC
GCGGCCTGA
 
Protein sequence
MTIRVSGKSI SVGEALRGRV SERTEEVLRK YFDGNYSGHI TLSKDGFGFR TDCSLHLDSG 
ITLEAESNAA DAYVSADQAL LQIEKRLRRY KSRLKDRSSR KAHAEATALA ELTAPVDMPS
YVIEAPGDEE HHEDAYNPVI IAEATTAMKR LSVSEAVVEL DLTGAPVLIF LHGGSGRVNI
IYRRADGNIG WIDPPSLNGA AA