Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_0179 |
Symbol | |
ID | 4020636 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 203618 |
End bp | 204226 |
Gene Length | 609 bp |
Protein Length | 202 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637960357 |
Product | sigma 54 modulation protein/ribosomal protein S30EA |
Protein accession | YP_567320 |
Protein GI | 91974661 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1544] Ribosome-associated protein Y (PSrp-1) |
TIGRFAM ID | [TIGR00741] ribosomal subunit interface protein |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.416833 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCATCC GGGTCTCCGG CAAGAGCATC AGCGTCGGCG AAGCGCTGCG CGGCCGTGTC AGCGAGCGCA CCGAAGAGGT GTTGCGCAAA TATTTCGATG GCAATTATTC GGGCCATATT ACGCTGAGCA AGGACGGCTT TGGATTCCGC ACCGACTGCT CGCTGCATCT CGATTCCGGC ATCACGCTGG AAGCCGAGTC GAACGCTGCC GATGCTTATG TCAGCGCCGA TCAGGCGCTG CTGCAAATCG AGAAGCGGCT GCGCCGCTAC AAGAGCCGGC TGAAGGATCG CTCGTCCCGC AAGGCCCATG CCGAGGCGAC CGCCCTGGCC GAACTGACTG CGCCGGTCGA CATGCCGAGC TACGTCATCG AGGCGCCCGG CGACGAGGAG CATCACGAGG ACGCGTATAA TCCGGTGATC ATCGCCGAGG CCACCACCGC CATGAAGCGT CTGTCGGTCA GCGAAGCCGT GGTGGAGCTC GACCTCACCG GCGCGCCGGT GCTGATCTTC CTTCACGGCG GCTCCGGCCG TGTGAACATC ATCTACCGTC GCGCCGACGG CAATATCGGT TGGATCGATC CGCCGTCGCT GAACGGCGCC GCGGCCTGA
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Protein sequence | MTIRVSGKSI SVGEALRGRV SERTEEVLRK YFDGNYSGHI TLSKDGFGFR TDCSLHLDSG ITLEAESNAA DAYVSADQAL LQIEKRLRRY KSRLKDRSSR KAHAEATALA ELTAPVDMPS YVIEAPGDEE HHEDAYNPVI IAEATTAMKR LSVSEAVVEL DLTGAPVLIF LHGGSGRVNI IYRRADGNIG WIDPPSLNGA AA
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