Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_0178 |
Symbol | |
ID | 4020635 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 201922 |
End bp | 203562 |
Gene Length | 1641 bp |
Protein Length | 546 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637960356 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_567319 |
Protein GI | 91974660 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.570253 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGCTCA CGCAACGCCT CGAATTTCGC CAATCGCAGT CGCTGGTGAT GACGCCGCAG CTGATGCAGG CGATCAAGCT GCTGCAACTG TCCAATTTGG ATCTCGCGGT GTTCGTCGAG GACGAGCTCG AGAAGAACCC GCTGCTGGAC CGCGCCAGCG ACAACGCCGA ACCGCTGGTT GCCGGCGAAG CGTCGATGGA CCGCGCCGAG AATGCGGGTG ACGAGTTCGG CGGCAGCGAG GCCGGCGGCG AGGCATCGGA CTTCGCCGAC AACGCAGGCG GCGATTCCTT CGAGCCGGGC AGCGAAGAAT GGATGCACCG CGATCTCGGC AGCCGCAGCG AGATCGAGCA GACACTCGAT ACCGGCATGG AGAACGTGTT CCCGGAGGAG CCGGCCGAGG CTGCGGCCCG CGCCGCTCAG GACGCGGCGC CGGCGTCATA TACCGAGTGG GGCGGCGGCG CCTCCAGCGA CGAGGGCTAC AATCTCGAAG CCTTCGTTGC GGCCGAGACC TCGCTGGCCG ACCATCTCAG CGAGCAGCTC GCAGTCGCGC TGTCCTCACC ATCGGAACGC ATGATCGGGC AATATCTGAT CGACCTCGTC GACGATGCGG GCTACCTGCC AGCCGATCTC GGTGAGGCCG CCGAGCGTCT CGGAACGACC CAGACCGAAG TCGAAGCCGT GGTCGGCGTG CTGCAAACCT TCGACCCGCC GGGCATCTGC GCGCGTTCTT TGGCCGAATG CCTCGCCATT CAATTGCGTG AACTCGACCG GTTCGACCCG GCGATGCAGG CGCTGATCGA GCACCTCGAT CTCTTGGCCA AGCGCGACGT CGTCAGCTTG CGCAAGATTT GCGGCGTCGA TGACGAGGAC CTCGCCGACA TGATCGGCGA AATCCGTCAC CTCGATCCGA AACCTGGCCT GAAGTTCAAC TCCTCTCGCG TGCAGACCGT CGTGCCCGAT GTGTTCGTGC GCCCCGGCCC CGACGGAGGC TGGCTGGTCG AACTCAACAG CGACACGCTG CCGAAGGTGC TGGTCAACCA GTCCTATTAC TCGGAGTTGT CGAAGACGAT CCGCAAGGAT GGCGACAAAT CCTACTTCTC CGACTGCCTG CAGACCGCAA CCTGGCTGGT GCGCGCGCTC GACCAGCGCG CTCGCACCAT TTTGAAGGTC GCGACCGAGA TCGTGCGCCA GCAGGACGGC TTCTTCACCC ACGGCGTCGC GCATCTGCGA CCACTGAATC TGAAAGCGGT GGCCGACGCG ATCCAGATGC ACGAGTCGAC GGTGTCGCGC GTGACCGCCA ACAAATATAT GGCGACCAAC CGTGGCACGT TCGAACTGAA GTATTTCTTT ACCGCGTCAA TCGCCTCCGC CGATGGCGGC GAGGCGCATT CCGCCGAAGC CGTTCGTCAT CACATCCGGC AATTGATCGA TGGCGAGGAT CCGTCAGCAA TTCTGTCGGA CGACACGATC GTGGAGAGGC TGCGCGGAGC CGGCATCGAT ATCGCACGTC GTACCGTCGC GAAATATCGC GAGGCGATGC GCATCCCCTC GTCGGTGCAA CGGCGACGCG ACAAGCACAG CATGCTCGGC ACGGCCCTGA CGGCGCCAGC CGATCGGTCC CGCGACACCG CTCCGGCTTG A
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Protein sequence | MALTQRLEFR QSQSLVMTPQ LMQAIKLLQL SNLDLAVFVE DELEKNPLLD RASDNAEPLV AGEASMDRAE NAGDEFGGSE AGGEASDFAD NAGGDSFEPG SEEWMHRDLG SRSEIEQTLD TGMENVFPEE PAEAAARAAQ DAAPASYTEW GGGASSDEGY NLEAFVAAET SLADHLSEQL AVALSSPSER MIGQYLIDLV DDAGYLPADL GEAAERLGTT QTEVEAVVGV LQTFDPPGIC ARSLAECLAI QLRELDRFDP AMQALIEHLD LLAKRDVVSL RKICGVDDED LADMIGEIRH LDPKPGLKFN SSRVQTVVPD VFVRPGPDGG WLVELNSDTL PKVLVNQSYY SELSKTIRKD GDKSYFSDCL QTATWLVRAL DQRARTILKV ATEIVRQQDG FFTHGVAHLR PLNLKAVADA IQMHESTVSR VTANKYMATN RGTFELKYFF TASIASADGG EAHSAEAVRH HIRQLIDGED PSAILSDDTI VERLRGAGID IARRTVAKYR EAMRIPSSVQ RRRDKHSMLG TALTAPADRS RDTAPA
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