| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0159 |
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| Symbol | |
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| ID | 4020615 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 180631 |
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| End bp | 182859 |
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| Gene Length | 2229 bp |
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| Protein Length | 742 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637960336 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_567300 |
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| Protein GI | 91974641 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.43432 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCAAA TTCGGCTGAA GGCGAACAAG ACCTCGAAAA GGTGCGCGGG CGCAGCGCTC
CGGAAGCGCC GCCGCGCCGT GCGGAAAGGC CCCGGACCAT CAACCGTTCC GAAACGGCCG
GTGCGCGCGG GCCTGGCCGC CGAGCGTGAG CGCGCCGTCG CGCAGGCGCT GGCCGAGGCG
CGCAAATCGC ATGAGCGGCT GCGCGAGGCG ATCGACCTCG TACCGCAGGG AATCGTGTTT
CTCGATTCCG AAGGCCGCTA CATTCTGTGG AACAAGCGCT ATGCCGAGAT CTACAAGGCC
AGCGCCGATA TGTTCAAACC CGGCGCGCGG TTTCAGGACA CGCTCCGGGT CGGCATCGCG
CGCGGCGACT ATCCGGAGGC GATCGGCCGC GAGGACGACT GGATCGCCGA GCGGATGCAA
CGGATGTTTC ATCCGAGCCA CAGCCACGAG CAGATTCTCG CCGACGGCCG CTGCATCCAG
ATCGAGGAAT GCACCACCTC CGACGGCGGC GTGATCGGCC TGCGCGTCGA CATCACCGAG
CTCAAGCAGC GCGAAGCGTC GTTCCGGCTG ATGTTCGACA GCAATCCGGT GCCGATGATC
GTCTGCGCGC TGCGGGACGA ACGCATCCTC GCGGTCAACG ACGCTGCGGT CGCGCATTAC
GGCTATTCGT CCGTCGAGTT CGCCCAGCTG ACGCTCCGCC GCCTGCAGGC GTTCGAGTCC
GATCTGCCCT GGGCCGGCGA CCACACCGAC GACGAGCGCG CGGCGCGAAC CTGGAAGCAC
GTCAAGGCCG ACGGTTCGCT GATCGATCTG GCGATCTATT CGCGGCAGCT CACCTATAAC
GGCGAGCCGG CGGTGCTGCT GGCGCTGATG GACATCACCG AACGCAAGCG CGCCGAGATG
CGGCTGGCGT TCATGACCCA TCACGACGGG CTGACCGGGC TGCCGAACCG CAATCTGCTG
CGCAAGCGGC TCGACGAATT GCTGGTCCAC ACTAGGCGCG CCAGCGACAA GATCGCGGTG
CTGTTCATCG GCATCGACCA TTTCAAGGCG GTCAACGACA CGCTGGGCCA CGCGATCGGC
GACAAGCTGC TGCGCGGCGT CGCGCGGCGG CTGCGCTCGA CATTGCGTGA GGAGGACCTG
CTGGCGCGGC TCAACTCCGA TGAGTTCGCG GTGGTGCAGA CCGGGATCAG GCGGCCGCAG
GAGATCACGC TGCTCGCCAA GCGGCTGTTG AACGCGATCG CCGAGCCGTA TCTGCTCGAC
GGCCATTCGG TCGTGGCCGG CGCCAGCATC GGCATCGCGG TCGCGCCGGT CGACGGCGAT
GATTCGGAAA AGCTGCTGAT GAACGCCGAC ATGGCGTTGT CGCGCGCCAA GAACGACTCG
CGCGGCAGCT TCAGCTTTTT CGAGCCGGGG ATGGACGCCC GCGCCCAGGC CCGTCGCAAG
ATCGAGACCG AACTGCGCAC CGCGCTGCGC AACGAGGTGC TGCGCCCGTA TTATCAGCCG
CTGGTGGAGC TCTCGAGCGG CCGGATTTCC GGCTGCGAGG CGCTGGTGCG CTGGCCGCAT
CCGGATCGTG GCATGATCTC GCCGGCGGAA TTCATCCCGG TCGCCGAAGA CACCGGCCTG
ATCAACGCGA TCGGCGCGCA GGTGCTGCGC CAGGCCTGCC TCGACGCCTC GCGCTGGCCC
GGCGACATCC GGGTCGCGGT CAATCTGTCG CCGCTGCAGT TCAGGGTCGG CAATCTGATG
GCGACGGTGA TGGACGCGCT GAAATACGCC GGCCTGCCGC CGCATCGGCT CGAAATCGAG
ATCACCGAGA CGCTGCTGCT GGAGAAGAGC AGCCAGGTGA TCGCCACGCT GCACGCGCTG
CGCGCGCTCG GCGTCCGCAT CTCGATGGAC GATTTCGGCA CCGGCTATTC GAGCCTGAGC
TATCTGCGTA GCTTCCCGTT CGACAAGATC AAGATCGATC AGTCGTTCGT ACGCGACCTG
TGCAACAATC GCGAGGCTCA GGCGATCGTC CGCGCGATCA TCAGCCTCGG CATGGGGCTC
GGCGTCACCA TCACGGCCGA AGGCGTCGAG ACCGAAGCCG AATTGAGCTG GCTGCGCGCC
GAAGGCTGCC ACGAGGCGCA AGGCTTCCTG TTCAGCGCCG CGCGGCCGAA CGAGGAGATC
AAGGGGCTGC TCGATCTGCA ACAATCCGCC GCCCCCGACC AGCAATTCCC CGCCGCCCGC
GTCGCTTAG
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| Protein sequence | MPQIRLKANK TSKRCAGAAL RKRRRAVRKG PGPSTVPKRP VRAGLAAERE RAVAQALAEA
RKSHERLREA IDLVPQGIVF LDSEGRYILW NKRYAEIYKA SADMFKPGAR FQDTLRVGIA
RGDYPEAIGR EDDWIAERMQ RMFHPSHSHE QILADGRCIQ IEECTTSDGG VIGLRVDITE
LKQREASFRL MFDSNPVPMI VCALRDERIL AVNDAAVAHY GYSSVEFAQL TLRRLQAFES
DLPWAGDHTD DERAARTWKH VKADGSLIDL AIYSRQLTYN GEPAVLLALM DITERKRAEM
RLAFMTHHDG LTGLPNRNLL RKRLDELLVH TRRASDKIAV LFIGIDHFKA VNDTLGHAIG
DKLLRGVARR LRSTLREEDL LARLNSDEFA VVQTGIRRPQ EITLLAKRLL NAIAEPYLLD
GHSVVAGASI GIAVAPVDGD DSEKLLMNAD MALSRAKNDS RGSFSFFEPG MDARAQARRK
IETELRTALR NEVLRPYYQP LVELSSGRIS GCEALVRWPH PDRGMISPAE FIPVAEDTGL
INAIGAQVLR QACLDASRWP GDIRVAVNLS PLQFRVGNLM ATVMDALKYA GLPPHRLEIE
ITETLLLEKS SQVIATLHAL RALGVRISMD DFGTGYSSLS YLRSFPFDKI KIDQSFVRDL
CNNREAQAIV RAIISLGMGL GVTITAEGVE TEAELSWLRA EGCHEAQGFL FSAARPNEEI
KGLLDLQQSA APDQQFPAAR VA
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