Gene RPD_0124 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0124 
Symbol 
ID4020580 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp141403 
End bp143565 
Gene Length2163 bp 
Protein Length720 aa 
Translation table11 
GC content68% 
IMG OID637960301 
Productpenicillin-binding protein 1A 
Protein accessionYP_567265 
Protein GI91974606 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.994879 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.789667 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGTTGG GCAAGAAGAA AGCCGGCGAA CGGCGGGAGC CGAAATTCGG CTTTGCTGAA 
TCGCTCGCCC ATTTGCGCCT CGGACCGCAG GACCGGGTCA GCGTCGCGGA CGATGACAGG
CCGAAAAAAC CCAAGGCTCA GGCCGGCAAA TCCGGCGGCG GCGGGCGCGG CAAGTCCCGC
GGCAAATCGC GTAAAAAGGG CGGCCTGCGC AGCCTCGTGA CCCGCACAGT GTATTGGACT
GCGGTCGCCG GCATCTGGGC GGTGCTGGCG GTGGTCGGAA TCATGGTCTG GGTGGGCGCG
CATCTGCCGC CGATCCAGTC GCTGGAAATC CCCAAGCGCC CGCCGACCAT CACCATCGTG
GGCGCAGACG GCAGCCAGCT TGCGGTGCGC GGCGAGATGG CCGGCACCAA TGTGTCGCTG
AAGGATCTGC CGCCTTATCT GCCGAAGGCG TTCATCGCGA TCGAGGACCG GCGGTTCTAT
TCGCATTTCG GCGTCGACCC CATGGGCATC GCGCGCGCCG CGGTCGCCAA CGTCATGCAT
CGCGGCGTGT CGCAGGGCGG CTCGACCCTG ACCCAGCAGC TCGCCAAGAA CCTGTTCCTG
ACCCAGGACC GCACCCTGAC GCGCAAGCTG CAGGAGGTCG AACTGGCGCT GTGGCTGGAG
CGCAAGCACG CCAAGGCCGA GATTCTCGAA CTGTATCTCA ACCGGGTGTA TTTCGGCTCC
GGCGCTTATG GGGTCGAAGC CGCGGCGCGG AAATATTTCG GCAAATCGGC GAAGGAGGTC
TCGCTGGTCG AGGCGGCGAT GCTCGCGGGC CTCGTCAAAT CGCCGTCGCG GCTGGCGCCG
AACCGCAATC CCGAGGGCGC CGAAAAGCGC GCCCAGCTCG TCCTCGCCGC GATGGCGGAG
GCCGATTTCA TCACCGACAA GCAGGCCCGG GCCGCGATCG CCAATCCGGT CTACACGGTG
GCGCCGACCG GCGCCGGCAC CCTCAATTAC GTCGCCGACT GGATCGGCGA GGTGCTCGAC
GATCTGGTCG GGCAGATCGA TCAGTCGATC GTGGTCGAGA CGTCGATCGA TCCGAAGCTG
CAGACCGAAG CCGAAGCCGC GATCATCGAC GAACTCGCGG CCAAGAGCGT GAAGTTCAAA
GTCTCGCAGG GCGCGCTGGT GGCGATGACG CCGGACGGCG CGGTGCGGGC GATGATCGGC
GGCCGGAACT ACGCCGACAG CCAGTTCAAC CGCGCCGTCA CCGCCAAGCG GCAGCCGGGC
TCGGCGTTCA AGCCGTTCGT GTATCTCACC GCGATCGAGG CCGGGTTGAC GCCGGACACG
ATCCGGCAGG ACGCGCCGCT CGACCTCAAG GGCTGGCGGC CCGAGAACTA TACGCATGAG
TATTTCGGCG CCGTGACGCT GACGCAGGGG TTGGCGATGT CGCTCAACAC CGTCGCGGTG
CGGCTCGGGC TCGAAGTCGG GCCGAAGAAC GTGGTGCGCA CCGCGCATCG CCTCGGCATC
GCCTCGAAGC TCGACGCCAA TCCGTCGATC GCGCTCGGCA CCTCGGAAGT CTCGCTGGCC
GAACTGGTCG GCGCCTATGC GCCGTTCGCC AATGGCGGGC TGATGGCGTC GCCGCATGTC
GTCACCCGGA TTCGCACCGC GAGCGGCAAC AAGCTGCTTT ATGCGCGGCC GAGCGATCCG
CCGAGCCGCG TCGTCGATGC CCGCGCGGTG GCGATGATGA ACACCATGAT GCAGGAGACG
CTGCAATCGG GCACCGGGCG CAAGGCCGAT CTGCCGGGCT GGAGCGCCGC CGGCAAGACC
GGCACCAGCC AGGATTTCCG CGACGCCTGG TTCATCGGCT ACACCTCGAC GCTGATCACC
GGGGTCTGGC TTGGCAATGA CGACAACTCG CCGACCAAGA AGGCGACCGG CGGCGGCCTG
CCAGTCGACG TCTGGACCCG CTTCATGCGC GCGGCCCTGC AGGGCGCCGC GCCACAACCG
CTGCCGGGCG GCTGGGTCGA AGCGCCGGCG ACGATCGCTC AGTCGGGACC GCGCGGCGAA
ACACAGGTCA TGAACGTCGC GCCTCCGAGC GGACGCGCTC CCCAACCGAC CCGAGCCAAC
GTGCGCCCCG AAGCGGACAC CGGGTTGGAT GGCTGGCTGA TGGATCGGCT GTTCGGACGG
TAG
 
Protein sequence
MALGKKKAGE RREPKFGFAE SLAHLRLGPQ DRVSVADDDR PKKPKAQAGK SGGGGRGKSR 
GKSRKKGGLR SLVTRTVYWT AVAGIWAVLA VVGIMVWVGA HLPPIQSLEI PKRPPTITIV
GADGSQLAVR GEMAGTNVSL KDLPPYLPKA FIAIEDRRFY SHFGVDPMGI ARAAVANVMH
RGVSQGGSTL TQQLAKNLFL TQDRTLTRKL QEVELALWLE RKHAKAEILE LYLNRVYFGS
GAYGVEAAAR KYFGKSAKEV SLVEAAMLAG LVKSPSRLAP NRNPEGAEKR AQLVLAAMAE
ADFITDKQAR AAIANPVYTV APTGAGTLNY VADWIGEVLD DLVGQIDQSI VVETSIDPKL
QTEAEAAIID ELAAKSVKFK VSQGALVAMT PDGAVRAMIG GRNYADSQFN RAVTAKRQPG
SAFKPFVYLT AIEAGLTPDT IRQDAPLDLK GWRPENYTHE YFGAVTLTQG LAMSLNTVAV
RLGLEVGPKN VVRTAHRLGI ASKLDANPSI ALGTSEVSLA ELVGAYAPFA NGGLMASPHV
VTRIRTASGN KLLYARPSDP PSRVVDARAV AMMNTMMQET LQSGTGRKAD LPGWSAAGKT
GTSQDFRDAW FIGYTSTLIT GVWLGNDDNS PTKKATGGGL PVDVWTRFMR AALQGAAPQP
LPGGWVEAPA TIAQSGPRGE TQVMNVAPPS GRAPQPTRAN VRPEADTGLD GWLMDRLFGR