| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0124 |
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| Symbol | |
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| ID | 4020580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 141403 |
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| End bp | 143565 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637960301 |
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| Product | penicillin-binding protein 1A |
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| Protein accession | YP_567265 |
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| Protein GI | 91974606 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.994879 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.789667 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTTGG GCAAGAAGAA AGCCGGCGAA CGGCGGGAGC CGAAATTCGG CTTTGCTGAA
TCGCTCGCCC ATTTGCGCCT CGGACCGCAG GACCGGGTCA GCGTCGCGGA CGATGACAGG
CCGAAAAAAC CCAAGGCTCA GGCCGGCAAA TCCGGCGGCG GCGGGCGCGG CAAGTCCCGC
GGCAAATCGC GTAAAAAGGG CGGCCTGCGC AGCCTCGTGA CCCGCACAGT GTATTGGACT
GCGGTCGCCG GCATCTGGGC GGTGCTGGCG GTGGTCGGAA TCATGGTCTG GGTGGGCGCG
CATCTGCCGC CGATCCAGTC GCTGGAAATC CCCAAGCGCC CGCCGACCAT CACCATCGTG
GGCGCAGACG GCAGCCAGCT TGCGGTGCGC GGCGAGATGG CCGGCACCAA TGTGTCGCTG
AAGGATCTGC CGCCTTATCT GCCGAAGGCG TTCATCGCGA TCGAGGACCG GCGGTTCTAT
TCGCATTTCG GCGTCGACCC CATGGGCATC GCGCGCGCCG CGGTCGCCAA CGTCATGCAT
CGCGGCGTGT CGCAGGGCGG CTCGACCCTG ACCCAGCAGC TCGCCAAGAA CCTGTTCCTG
ACCCAGGACC GCACCCTGAC GCGCAAGCTG CAGGAGGTCG AACTGGCGCT GTGGCTGGAG
CGCAAGCACG CCAAGGCCGA GATTCTCGAA CTGTATCTCA ACCGGGTGTA TTTCGGCTCC
GGCGCTTATG GGGTCGAAGC CGCGGCGCGG AAATATTTCG GCAAATCGGC GAAGGAGGTC
TCGCTGGTCG AGGCGGCGAT GCTCGCGGGC CTCGTCAAAT CGCCGTCGCG GCTGGCGCCG
AACCGCAATC CCGAGGGCGC CGAAAAGCGC GCCCAGCTCG TCCTCGCCGC GATGGCGGAG
GCCGATTTCA TCACCGACAA GCAGGCCCGG GCCGCGATCG CCAATCCGGT CTACACGGTG
GCGCCGACCG GCGCCGGCAC CCTCAATTAC GTCGCCGACT GGATCGGCGA GGTGCTCGAC
GATCTGGTCG GGCAGATCGA TCAGTCGATC GTGGTCGAGA CGTCGATCGA TCCGAAGCTG
CAGACCGAAG CCGAAGCCGC GATCATCGAC GAACTCGCGG CCAAGAGCGT GAAGTTCAAA
GTCTCGCAGG GCGCGCTGGT GGCGATGACG CCGGACGGCG CGGTGCGGGC GATGATCGGC
GGCCGGAACT ACGCCGACAG CCAGTTCAAC CGCGCCGTCA CCGCCAAGCG GCAGCCGGGC
TCGGCGTTCA AGCCGTTCGT GTATCTCACC GCGATCGAGG CCGGGTTGAC GCCGGACACG
ATCCGGCAGG ACGCGCCGCT CGACCTCAAG GGCTGGCGGC CCGAGAACTA TACGCATGAG
TATTTCGGCG CCGTGACGCT GACGCAGGGG TTGGCGATGT CGCTCAACAC CGTCGCGGTG
CGGCTCGGGC TCGAAGTCGG GCCGAAGAAC GTGGTGCGCA CCGCGCATCG CCTCGGCATC
GCCTCGAAGC TCGACGCCAA TCCGTCGATC GCGCTCGGCA CCTCGGAAGT CTCGCTGGCC
GAACTGGTCG GCGCCTATGC GCCGTTCGCC AATGGCGGGC TGATGGCGTC GCCGCATGTC
GTCACCCGGA TTCGCACCGC GAGCGGCAAC AAGCTGCTTT ATGCGCGGCC GAGCGATCCG
CCGAGCCGCG TCGTCGATGC CCGCGCGGTG GCGATGATGA ACACCATGAT GCAGGAGACG
CTGCAATCGG GCACCGGGCG CAAGGCCGAT CTGCCGGGCT GGAGCGCCGC CGGCAAGACC
GGCACCAGCC AGGATTTCCG CGACGCCTGG TTCATCGGCT ACACCTCGAC GCTGATCACC
GGGGTCTGGC TTGGCAATGA CGACAACTCG CCGACCAAGA AGGCGACCGG CGGCGGCCTG
CCAGTCGACG TCTGGACCCG CTTCATGCGC GCGGCCCTGC AGGGCGCCGC GCCACAACCG
CTGCCGGGCG GCTGGGTCGA AGCGCCGGCG ACGATCGCTC AGTCGGGACC GCGCGGCGAA
ACACAGGTCA TGAACGTCGC GCCTCCGAGC GGACGCGCTC CCCAACCGAC CCGAGCCAAC
GTGCGCCCCG AAGCGGACAC CGGGTTGGAT GGCTGGCTGA TGGATCGGCT GTTCGGACGG
TAG
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| Protein sequence | MALGKKKAGE RREPKFGFAE SLAHLRLGPQ DRVSVADDDR PKKPKAQAGK SGGGGRGKSR
GKSRKKGGLR SLVTRTVYWT AVAGIWAVLA VVGIMVWVGA HLPPIQSLEI PKRPPTITIV
GADGSQLAVR GEMAGTNVSL KDLPPYLPKA FIAIEDRRFY SHFGVDPMGI ARAAVANVMH
RGVSQGGSTL TQQLAKNLFL TQDRTLTRKL QEVELALWLE RKHAKAEILE LYLNRVYFGS
GAYGVEAAAR KYFGKSAKEV SLVEAAMLAG LVKSPSRLAP NRNPEGAEKR AQLVLAAMAE
ADFITDKQAR AAIANPVYTV APTGAGTLNY VADWIGEVLD DLVGQIDQSI VVETSIDPKL
QTEAEAAIID ELAAKSVKFK VSQGALVAMT PDGAVRAMIG GRNYADSQFN RAVTAKRQPG
SAFKPFVYLT AIEAGLTPDT IRQDAPLDLK GWRPENYTHE YFGAVTLTQG LAMSLNTVAV
RLGLEVGPKN VVRTAHRLGI ASKLDANPSI ALGTSEVSLA ELVGAYAPFA NGGLMASPHV
VTRIRTASGN KLLYARPSDP PSRVVDARAV AMMNTMMQET LQSGTGRKAD LPGWSAAGKT
GTSQDFRDAW FIGYTSTLIT GVWLGNDDNS PTKKATGGGL PVDVWTRFMR AALQGAAPQP
LPGGWVEAPA TIAQSGPRGE TQVMNVAPPS GRAPQPTRAN VRPEADTGLD GWLMDRLFGR
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