Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_0081 |
Symbol | def |
ID | 4020536 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 96621 |
End bp | 97148 |
Gene Length | 528 bp |
Protein Length | 175 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637960258 |
Product | peptide deformylase |
Protein accession | YP_567222 |
Protein GI | 91974563 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.364538 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0628749 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCCTGC GTGAAATCAT CATCCTGCCG GATAAGCGGC TGCGTGAAAT CTCAAAGCCC GTCGCCGAGG TGACGCCGGA GATCCGCAAG CTCGCGGACG ACATGTTCGA GAGCATGTAC GACGCGCCCG GCATCGGGCT CGCGGCGATT CAGATCGCCG AGCCGGTGCG GCTCATCACG ATGGACATCG TGCGCAAGGA GGGCAACGGC AAGAGCGATC CGCGCGCCTT CATCAATCCG GAAATCGTCG GCGCCTCGGC GGAGATGAAC GTCTACGAGG AAGGCTGCCT GTCGATCCCC GAATATTACG CCGATGTCGA GCGGCCGGCA GTGGTCCGGA TCCGCTACAC CGATCTCGAC GGCAACGTGA AGGAAGAGGA CGCCGACGGC CTGTTCGCGA CCTGCATCCA GCACGAAATC GACCACCTCG ACGGCGTGCT GTTCGTCGAC CATCTGTCGA AGCTGAAGCG CGCCATGGTC GTGCGCAAGT TCGAGAAGGC CGCCAAGCGC GGTATCAAAT ACGTCTGA
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Protein sequence | MALREIIILP DKRLREISKP VAEVTPEIRK LADDMFESMY DAPGIGLAAI QIAEPVRLIT MDIVRKEGNG KSDPRAFINP EIVGASAEMN VYEEGCLSIP EYYADVERPA VVRIRYTDLD GNVKEEDADG LFATCIQHEI DHLDGVLFVD HLSKLKRAMV VRKFEKAAKR GIKYV
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