| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0079 |
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| Symbol | truA |
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| ID | 4020534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 94698 |
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| End bp | 95435 |
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| Gene Length | 738 bp |
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| Protein Length | 245 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637960256 |
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| Product | tRNA pseudouridine synthase A |
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| Protein accession | YP_567220 |
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| Protein GI | 91974561 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.594696 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0632026 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCCCGCT ACAAGCTCAC CATCGAATAT GACGGCGCTC CGTTCTGCGG CTGGCAGTTG
CAGCCGGTGC TGCCGTCGGT GCAGGGCGCG CTGGAGGCGG CGGCGCTGGC GACGTGCGGC
GAGGCGGTGC GCGTGCACGG CGCGGGACGC ACGGACGCCG GCGTCCATGC GCTGGGGCAG
GTCGCCCATC TCGACATTGC CAAGCCGTTT CGCGCCGACC GGCTGCGCGA CGCGCTGAAC
GCCCATGTGC GACCGTATCC GGTCGCGGTG CTGTCGACGG AGATCGTGCC GGACAGTTTC
GAGGCGCGGT TCTCCGCGAT CCGGCGGCAC TATCGCTATC GCATCGTCAA CCGCCGCTCG
AATCTCGCGC TCGAGATCGG GAAGGTGTGG CGGGTGCCGA AGCCGCTCGA CACCGACGCG
ATGCATCGCG CCGCGCAGGT GCTGATCGGC AAGCACGACT TCACCACCTT CCGCGACACC
GAATGCCAGG CGGCCTCGCC GGAGAAGACG CTCGACGTGC TCGATGTGGT GCGCAGCGGC
GACTGCGTCG ACATCATCAC CTCGGCGCGC TCTTATCTAC ACAGCCAGGT GCGTTCGATG
GTCGGCTCGC TGGTGTGGGT CGGCGAGGGC CGCTGGAGCG CCGATGATCT CGCCGCTGCG
CTGGCCGCCC GCCGCCGCTC CGCCTGCGGC CCGGTCGCGC CGCCGGACGG GCTGTATCTG
GTGAAGGTGG ATTACTAA
|
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| Protein sequence | MPRYKLTIEY DGAPFCGWQL QPVLPSVQGA LEAAALATCG EAVRVHGAGR TDAGVHALGQ
VAHLDIAKPF RADRLRDALN AHVRPYPVAV LSTEIVPDSF EARFSAIRRH YRYRIVNRRS
NLALEIGKVW RVPKPLDTDA MHRAAQVLIG KHDFTTFRDT ECQAASPEKT LDVLDVVRSG
DCVDIITSAR SYLHSQVRSM VGSLVWVGEG RWSADDLAAA LAARRRSACG PVAPPDGLYL
VKVDY
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